Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02513 ATGGAAAGTAAAAGTACTACTAGTGACACATGTTCTGTTCCACTTTCTCATAACTCTTCAACTTCATCTAACTCTAACTCTCCTCCACAAGCTGTTGTTGTTTTGAGCCCTTGTGCTGCTTGCAAGATTTTGAGGAGAAGATGTTCCGCTGATAAATGTGTTTTGGCTCCTTATTTTCCTCCTACTGATCCTGCCAAGTTTACCATTGCTCATAGAGTCTTTGGTGCTAGCAATATCATCAAATTCTTACAGGAACTGCCTGAGGCTCGAAGAGCGGATGCAGTTACGAGCATGGTTTATGAGGCGAGTGCGAGAATTAGAGATCCTGTTTATGGTTGTGCGGGAGCAATTTGTCAGCTTCAAAAGCAGGTGAATGAGCTTCAAGCACAATTGGCGAAATCGCAAGCGGAGGTTGTAAACATGCAACTCCAACAAGCGAATCTTGTGGCTTTATTTTGCATGTCACAAAGTGAACAAGAGTCACCACAGCAATCTATGGATGAGTTCATTCAAAGTCCAATGCAGAGTGGTGGCTATGGAATTGGTTTGAACTTTCTTGAGGAGAATAATAGTCTAAATTCATTATGGGAGCCACTTTGGACATGA 606 0.4224 MESKSTTSDTCSVPLSHNSSTSSNSNSPPQAVVVLSPCAACKILRRRCSADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEARRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAEVVNMQLQQANLVALFCMSQSEQESPQQSMDEFIQSPMQSGGYGIGLNFLEENNSLNSLWEPLWT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02513 201 MobiDBLite consensus disorder prediction 1 30 - -
Vivi5g02513 201 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Vivi5g02513 201 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Vivi5g02513 201 Coils Coil 117 144 - -
Vivi5g02513 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02513 Vivi-Chr5 106463309 106464530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02513 33 201 AS2 family AT2G28500 67.204 1.12e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi5g02513 LOB 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02513 - - gmx:100789504 282.337