Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02501 ATGGATACCAAAGTGGCGAGGTTCAACGGAACTAAACGCGTCATTGGGACGAAAACCTGCATCTTTTGGCTCAATGGAAGATGCAACAGAGATAATTGTAGGTTTTTGCACGGTGAACCATCGACTCATTCTTGGAATCATAATGAAAGGAAGGGACGTTTCTCTTCAACACCGTATCATAATCCGAATAAGAGCCTTCCCAAACATAATGCCAGCAGCACCCTTTCAAATAGAAGGGTTGGAGATGACAAGTTTCCTCCCAAATGTAACAAGAAGACTGTGTTTATTCGGAAGACCGGGGATGACAAGTCGCCTCCCAGACATGAAACTGAGAGTCTCTTAAATCGAAAGACTGAGGACGAGAAGTCGCATCCCAAAGATGCTACTATTGGAGATGACAGTAAAAAGACACAAGTTGCTAAGGTCTCTCCAAAGCAAGTCTGCAAATATTGGATGAATGGCGATTGTGTTCGCGGGGAACATTGCCAGAATTTACATTCGTGGTTTTATGGTGATGGCTTTGCCACATTAGCAAAGCTTCAAGGACACAAGAAGCTTGTCACTGGAATTGGACTTCCACATGGATCAAACAAACTTTATTCTGGCAGCACCGATGGGACACTTCGGACATGGGACTGTGTTACTGGTCAATGTACTAATTTGATGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGTGAGGGCCCGTGGATTTTTGTTGGTCTGCATAACATTGTCAAGGCATGGAATACGCAGACTGCTTCTCATTTAACTCTCGATGGACCTAAGGGACGAGTCCTTTCCATGGTTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGACGGTGTAATTTCTGCATGGAGAGGCAGTTCTAAATCCGAGTCCCCTTTTGAACTGGTTGCATCACTACGCGGTCACACTAAATCTGTTGTTTGCCTGGCTGTTGGATGTAACAAGATGTTGTACTCAGGATCCAAGGATCAAAGCATCAAGGTTTGGGACCTAGACACATTTGAGTGTAAAATGACACTCAATGCGCATACAGACGAAGTCACGTCCCTTATTTGTTGGGACAATTTCCTGTTATCTGGTTCATCAGACTGCACTATCAAGGTCTGGTATAAAACCGTCGAGGATACTTTGGAAGTTGCATATTCACACAATGTAGAAAACGGCGTTGTTGCGTTATCTGGGATGACTGATCCAGAAAACAAGCCTATATTGTTCTGCTCTACCAGTGACAATTCAGTTCGCCTCTATGAACTGCCATCATTTGCCGAGAGGGGTAGATTGTTTGCTAAGCAAGAAGTTGGATTAATCCATACAGCTCCGGGTGGACTCTTCTTCACCGGAGACAGAACTGGTTTGCTGACTGTCTGGAAATGGTTGGAAAAGCCCAAGGTTGCAGCATCCTCTTGA 1422 0.4466 MDTKVARFNGTKRVIGTKTCIFWLNGRCNRDNCRFLHGEPSTHSWNHNERKGRFSSTPYHNPNKSLPKHNASSTLSNRRVGDDKFPPKCNKKTVFIRKTGDDKSPPRHETESLLNRKTEDEKSHPKDATIGDDSKKTQVAKVSPKQVCKYWMNGDCVRGEHCQNLHSWFYGDGFATLAKLQGHKKLVTGIGLPHGSNKLYSGSTDGTLRTWDCVTGQCTNLMNLGAEATSLISEGPWIFVGLHNIVKAWNTQTASHLTLDGPKGRVLSMVVGNDTLLAGAEDGVISAWRGSSKSESPFELVASLRGHTKSVVCLAVGCNKMLYSGSKDQSIKVWDLDTFECKMTLNAHTDEVTSLICWDNFLLSGSSDCTIKVWYKTVEDTLEVAYSHNVENGVVALSGMTDPENKPILFCSTSDNSVRLYELPSFAERGRLFAKQEVGLIHTAPGGLFFTGDRTGLLTVWKWLEKPKVAASS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02501 473 ProSiteProfiles Zinc finger C3H1-type profile. 143 169 IPR000571 GO:0046872
Vivi5g02501 473 MobiDBLite consensus disorder prediction 81 134 - -
Vivi5g02501 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515
Vivi5g02501 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 212 - -
Vivi5g02501 473 ProSiteProfiles Zinc finger C3H1-type profile. 15 40 IPR000571 GO:0046872
Vivi5g02501 473 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Vivi5g02501 473 SMART WD40_4 173 212 IPR001680 GO:0005515
Vivi5g02501 473 SMART WD40_4 252 289 IPR001680 GO:0005515
Vivi5g02501 473 SMART WD40_4 297 335 IPR001680 GO:0005515
Vivi5g02501 473 SMART WD40_4 381 422 IPR001680 GO:0005515
Vivi5g02501 473 SMART WD40_4 338 375 IPR001680 GO:0005515
Vivi5g02501 473 Gene3D - 2 55 - -
Vivi5g02501 473 SUPERFAMILY WD40 repeat-like 175 468 IPR036322 GO:0005515
Vivi5g02501 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 374 IPR001680 GO:0005515
Vivi5g02501 473 PANTHER - 27 472 IPR044715 -
Vivi5g02501 473 SMART c3hfinal6 16 39 IPR000571 GO:0046872
Vivi5g02501 473 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Vivi5g02501 473 MobiDBLite consensus disorder prediction 55 79 - -
Vivi5g02501 473 MobiDBLite consensus disorder prediction 38 54 - -
Vivi5g02501 473 MobiDBLite consensus disorder prediction 38 138 - -
Vivi5g02501 473 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Vivi5g02501 473 Pfam WD domain, G-beta repeat 340 374 IPR001680 GO:0005515
Vivi5g02501 473 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515
Vivi5g02501 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Vivi5g02501 473 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Vivi5g02501 473 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Vivi5g02501 473 PRINTS G protein beta WD-40 repeat signature 362 376 IPR020472 -
Vivi5g02501 473 Gene3D - 163 298 IPR015943 GO:0005515
Vivi5g02501 473 Gene3D - 299 472 IPR015943 GO:0005515
Vivi5g02501 473 SUPERFAMILY CCCH zinc finger 145 167 IPR036855 GO:0046872
Vivi5g02501 473 ProSiteProfiles GCM domain profile. 1 77 IPR003902 GO:0003677|GO:0006355
Vivi5g02501 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02501 Vivi-Chr5 106173559 106176198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02501 144 339 Eukaryotic Initiation Factors Gene Family AT2G46290 27.477 1.87e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g02501 WD40 3.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02501 - - mtr:25500966 565.074