Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02483 ATGATGAACGATAATGTTGGGAAAAAAAGTTTGGGGGAACAAAATCGCGAAGTTAATGAAGGGCTAGGTTCTGAATCGTCAACTGGAAATGACACGAGATTTAGTAAGGTAACGAAAGATGGAAACGATGGGTTGAAGGGATCGAGTCGGATCCATGAGAGGTTTCAGGTTTCACCGCAACCACTACCCCGAGCTCCGGTTACTTACTGGGAAAGGTTTCTCCCTGTTACATCGATAAAAGTTTTGCTGGTGGACGATGATGATTCCACACGTAATGTTGTGTGTGCTCTGTTAAAGAATTGTGGTTATGAAGTCACTGCTGTTTCAAATGGTCTTCAAGCGTGGAAAGTTCTAGAAGATCCAGGAAAACGAATTGATCTTGTTCTAACTGAGGTAGCTATGCCTTTTGTATCCGGAATAGGTCTTTTGTGCAAGATCATGAGCCACATAGCTCTGAAGAATATTCCTGTGATTATGATGTCATCTCATGATTCTATGGGTATTGTCTTTAAGTGTTTGTCAAAAGGAGCAGCTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAAAACCTCTGGCAACATGTTTGGAGAAGATGCCATAGTTCTAGTGATAGTGGGAGCGAAAGTGGGACAAACACCCGAAAATTTGCAAAGTCAAGAAGCATCTGTGCATATGACAACAACAGTGGTAGCAGTGATGAGAATGATTATGGAAGCAGAGGCTTGAGTGTTAGAGATGGAAGTGACAAAGGAAGTGGAACTCAGAGTTCATGGACTACAAATCTAGCTCAAATTAGCAGCAGCCCTCATCCAGTTTCACCTCATAAACAATCTCATGATACTCCTGATAGCACGTGTGCCCAAGTGGTGCTTCCAAAGCCTGAAAACATTAGTAGTAAGTGGGACCAGGCCACAGAAAAAGAGTGCCATAAACCGATTGATCATCCTGATGATATTGCAATGGGTAAAGATTTAGCTATGGGAATATCTTTGAACATGCAAGAAAAGCATCCACATGAGGAACTATCTAACAATCCAATGTGTAAAGGAGTTAATAAGATGTCTGATACAGATGGTATGCAGCTCAATAAAGGACATAGCAGTGTTCATGAAAAAGTACAACCGGAAGAGGACAGTGATAGAACCAGGATGCAGGAAAATCAGGCTATGAATGTTGGTGTCACTGATAGCAGTAGTCCACAGGCTGAAAGCAGAGATTTGAATACTTCGAATGGTTTTTCTGCTTTTGCAAAAACAAAAACAAGTTGCTTCAAACAGCACCCATCACTTGAACTAACATTGAAAAGGATGGGAGAAGTAAAAGATGCTGAACATGTCACAGGTGATGAATGTAATGTTTTGAGACATTCAGATCTGTCGGCATTCTCCAAATACAATACAGCTTCCGCTTACCAGGCTCAGACTGGAAATGTAGGAAGCTGTTCCCCACTAGACAATAGTTCAGTTGCACCAAATACAGAGACAATACAGAACTTCACATCTCATTCAAATGCCACTCTTCCAAATCAACAGTCTAATGGGAGCAACAACATGAACGACCTGGCTTCCACTAATACATATCTTAGCACCAAACCTGAAAATTTTGACAAGAAACCCGAGTCTTCGAGAGGGATTGGCTCTTTTACTTCTTCTGAACTCCAAATCGTGCAAAATAATAGTGTCTCTACATCTCAGAAGAAGACTTCTGCCCAGGAAGAATGTGCTGGAAGCATTAAAGGACAGGTAGGAGGCTTTGAACAAGGATTTCAAGTCGAGCATGCTCAGCATCAACTTCAACATTGTAACCGCATTGCCCACAAGGAGGCAGTAGATCTCCGTTCAGTTCATGATATCTTAGTTGAAAGCACAACCAAAGATGATCAGCAATGTATGTCAAATGCGTTTGGAGAGCCAGCAGAAAGTAATGGCACAGCTACAAACTATGGGAATGATGGAAGTGCAGCTGAAAGTGATCATGGGAGCAATGGGCAGGACGGAAGCAACACTTTGACAATCGGAATGATAAATATGAGAAATAGCAATGTGGAGGCTGGGAGCTTTGGAATTAGTGGCATTGATAAAGTAAACACTGGAAGTGGGTCTTATGAACAACGATTTGCATTGAGAGAGGCTGCCTTGTTAAAGTTTCGTCTAAAGAGAAAAGAAAGATGCTTTGAAAAGAAGGTTAGATATCAGAGCCGGAAAAAATTGGCAGATCAGCGGCCGCGTGTTAGGGGACAATTTGTTAAACAAATAGTGTATGGTACCAATGAAGAAAATAAAGAAAGCGAGGAACTTGTATCTATGGATAATTCTAACGATGATCCCAAACAACACCAATCAAATTGCTGA 2358 0.4131 MMNDNVGKKSLGEQNREVNEGLGSESSTGNDTRFSKVTKDGNDGLKGSSRIHERFQVSPQPLPRAPVTYWERFLPVTSIKVLLVDDDDSTRNVVCALLKNCGYEVTAVSNGLQAWKVLEDPGKRIDLVLTEVAMPFVSGIGLLCKIMSHIALKNIPVIMMSSHDSMGIVFKCLSKGAADFLVKPIRRNELKNLWQHVWRRCHSSSDSGSESGTNTRKFAKSRSICAYDNNSGSSDENDYGSRGLSVRDGSDKGSGTQSSWTTNLAQISSSPHPVSPHKQSHDTPDSTCAQVVLPKPENISSKWDQATEKECHKPIDHPDDIAMGKDLAMGISLNMQEKHPHEELSNNPMCKGVNKMSDTDGMQLNKGHSSVHEKVQPEEDSDRTRMQENQAMNVGVTDSSSPQAESRDLNTSNGFSAFAKTKTSCFKQHPSLELTLKRMGEVKDAEHVTGDECNVLRHSDLSAFSKYNTASAYQAQTGNVGSCSPLDNSSVAPNTETIQNFTSHSNATLPNQQSNGSNNMNDLASTNTYLSTKPENFDKKPESSRGIGSFTSSELQIVQNNSVSTSQKKTSAQEECAGSIKGQVGGFEQGFQVEHAQHQLQHCNRIAHKEAVDLRSVHDILVESTTKDDQQCMSNAFGEPAESNGTATNYGNDGSAAESDHGSNGQDGSNTLTIGMINMRNSNVEAGSFGISGIDKVNTGSGSYEQRFALREAALLKFRLKRKERCFEKKVRYQSRKKLADQRPRVRGQFVKQIVYGTNEENKESEELVSMDNSNDDPKQHQSNC 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02483 785 PANTHER TWO-COMPONENT RESPONSE REGULATOR 80 277 IPR045279 GO:0009736
Vivi5g02483 785 MobiDBLite consensus disorder prediction 759 774 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 231 287 - -
Vivi5g02483 785 SUPERFAMILY CheY-like 78 205 IPR011006 -
Vivi5g02483 785 ProSiteProfiles Response regulatory domain profile. 80 198 IPR001789 GO:0000160
Vivi5g02483 785 MobiDBLite consensus disorder prediction 392 411 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 357 386 - -
Vivi5g02483 785 CDD psREC_PRR 81 184 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 17 35 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 756 785 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 250 287 - -
Vivi5g02483 785 Pfam Response regulator receiver domain 81 192 IPR001789 GO:0000160
Vivi5g02483 785 Pfam CCT motif 711 753 IPR010402 GO:0005515
Vivi5g02483 785 Gene3D - 78 230 - -
Vivi5g02483 785 SMART REC_2 79 194 IPR001789 GO:0000160
Vivi5g02483 785 MobiDBLite consensus disorder prediction 371 386 - -
Vivi5g02483 785 ProSiteProfiles CCT domain profile. 711 753 IPR010402 GO:0005515
Vivi5g02483 785 FunFam Two-component response regulator-like PRR37 79 237 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 631 673 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 1 57 - -
Vivi5g02483 785 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02483 Vivi-Chr5 105642852 105648941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02483 63 471 Response Regulator Gene Family AT5G60100 45.803 2.91e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vivi5g02483 Response_reg 3.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02483 K12129 - gmx:100785796 892.108