Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02479 ATGTCAAGGCCTGTTGAGAGAATAGTAGAGATCAATGATAGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACAGATGGAAAGTTGTCTCCAACAACAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGCTGTTGTTCCAGCACCGCATGTGTCGGTGTTCACCGAAAAATGCTTATTAGGCCATACTTATGCTGTATCTAATTTTAAGGTGGTGCCTTATGTTCCGGCCTTCAGGGCATCGGGACACAAATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCCGACATCATAACAGGGAGGTTTGACAAACATGTTCTGATTCATGTCGTTGGAATGGTTGATAGTATTGGTTATGCACAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTGCGTGATCACAGCAACAACATGTTGAACTGTACTTTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTCCCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGGTCATGAAAGACTTTATTGATAGAATGCTTGAGGAGAGCAGGGTAACCCTGTCTGAACAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGTGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGGAATAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCATGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAAATTAAGGAAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGAGACTCTGGAGATTAAAGAGAGTGTTGATGAGGCTAAAACAGATGGCAATGAAGACTGTGAATTGGTTATAGACCTGGAAATTACATCTGAGCACAAGCCTGATGCTGTCACACCTGGTGGTAAGAGGCATCTTCCTGCTGCATCAAGTGAATTCATTGATTTGGACGGATTACATGATGGGGAACTGTCATCTAACAAGCTGAAGAAGATAATTAAAATGGAGAAGATTGATTAG 1497 0.4041 MSRPVERIVEINDRKELWKIVVRIHHRWKVVSNNKEHFEMIFVDKLGDDIHAVVPAPHVSVFTEKCLLGHTYAVSNFKVVPYVPAFRASGHKYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLIHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPVMKDFIDRMLEESRVTLSEQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWYKIEIEVTHGGQSCNFVFWNRNRECEMLLGLSASQLRNTMIHAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQIKEKWGTDEEPIPIQTVVPETLEIKESVDEAKTDGNEDCELVIDLEITSEHKPDAVTPGGKRHLPAASSEFIDLDGLHDGELSSNKLKKIIKMEKID 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02479 498 CDD RPA1_DBD_B_like 137 240 - -
Vivi5g02479 498 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi5g02479 498 SUPERFAMILY Nucleic acid-binding proteins 118 239 IPR012340 -
Vivi5g02479 498 CDD RPA1_DBD_A_like 19 103 - -
Vivi5g02479 498 Gene3D - 282 403 IPR012340 -
Vivi5g02479 498 Gene3D - 110 248 IPR012340 -
Vivi5g02479 498 SUPERFAMILY Nucleic acid-binding proteins 8 103 IPR012340 -
Vivi5g02479 498 Gene3D - 3 104 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02479 Vivi-Chr5 105230618 105233179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02479 8 303 Core DNA Replication Machinery Family AT5G45400 20.000 1.78e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02479 - - vvo:131613993 770.385