Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02475 ATGTTAGATCTTAATCTATATGATGCGAACTCGGCCGATTCGACTCAGAACGCCGACTCGCCGATGATTTCGGAGAAGTTTCAACAAACTTCATGGAATCAAATGATGGAATCAGGAACATCGAATTCCTCCATCGTCAATGCGGACGCGGACGTGGACGGTTCAAGCAACAACGCAGGTGAGGAGGACTCGTGCTCCACGCGCGTGAATGACGTGTTCACCATCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTCCCTGTGACTGGAGGAGGTGAAGGTTTGTCTAATAATTGGAAGTTGCAAACTACGTCGTCGTTTCCGATTAGGAATGGTTCGGTTGATCTATCGTTTGATCAGAGAGAAGAGATGAAGTTTGTTCAGCCTCCACAACAACAAGCTAAAAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCCGACATAAATTTCAATCTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGAGGAGTTTGTGCATATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGAAGTTCAAAATACAGAGGAGTAACACTTCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATACCTTGGCAAAAAGGCATATGACAAAGCAGCTATCCAAAGCAATGGAATGGAAGCAGTGACTAATTTTGAGCCCAGCACATACGAAGGAGAGATGAAATCTGCAGCCATAAATGATGGCAGCAGTCCAAATCTTGATCTCAATTTGGGCATAGCCAAACCAGCACCGGGTCCCAAAGAAAATTGGGGAAAGTTTCACTTCCCCTCTCTCTCTTACACAAGTTCAAGGATGGAAACCAATGTTTCAGGAATCGGTAATTCATCTATAAAAAGGCTATTAGTAACTGAAGAGCGTCACTCTTCACGGAATGACATGCATCCCGGTTTCTTTCCTAATGAGGAAAGAGCAGATGGTATCAACAAAGATCCTTTAAAAGGACTCCCCATTTGGGCGTGGCAAACTAATGGCCAGGTCACTACTACCCCAGTGGCACGGGTCTCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTCCCTTTCCATCTACTCCATTATTTCCACCAAGATCTATGAACTCAATTCCCCTGAGTCTCTATTTTACATCGCCCAATGCACCTAACAGCAACACATCTCAATAA 1374 0.4432 MLDLNLYDANSADSTQNADSPMISEKFQQTSWNQMMESGTSNSSIVNADADVDGSSNNAGEEDSCSTRVNDVFTISFDILKMEGSNDVVTKEFFPVTGGGEGLSNNWKLQTTSSFPIRNGSVDLSFDQREEMKFVQPPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQYLGKKAYDKAAIQSNGMEAVTNFEPSTYEGEMKSAAINDGSSPNLDLNLGIAKPAPGPKENWGKFHFPSLSYTSSRMETNVSGIGNSSIKRLLVTEERHSSRNDMHPGFFPNEERADGINKDPLKGLPIWAWQTNGQVTTTPVARVSAAASSGFSISAPFPSTPLFPPRSMNSIPLSLYFTSPNAPNSNTSQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02475 457 SMART rav1_2 247 295 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 MobiDBLite consensus disorder prediction 133 156 - -
Vivi5g02475 457 CDD AP2 246 291 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 CDD AP2 155 210 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 MobiDBLite consensus disorder prediction 8 23 - -
Vivi5g02475 457 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Vivi5g02475 457 MobiDBLite consensus disorder prediction 36 65 - -
Vivi5g02475 457 SUPERFAMILY DNA-binding domain 246 290 IPR016177 GO:0003677
Vivi5g02475 457 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 317 - -
Vivi5g02475 457 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Vivi5g02475 457 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g02475 457 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Vivi5g02475 457 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02475 Vivi-Chr5 105052828 105056780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02475 1 433 AP2-EREBP Transcription Factor Family AT5G60120 44.989 7.10e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g02475 AP2 6.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02475 K09284 - gmx:100788303 624.394