Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02474 ATGTTAGATCTTAATCTATATGATGCGAACTCGGCCGATTCGACTCAGAACGCCGACTCGCCGATGATTTCGGAGAAGTTTCAACAAACTTCATGGAATCAAATGATGGAATCAGGAACATCGAATTCCTCCATCGTCAATGCGGACGCGGACGTGGACGGTTCAAGCAACAACGCAGGTGAGGAGGACTCGTGCTCCACGCGCGTGAATGACGTGTTCACCATCAGTTTCGATATTCTTAAAATGGAAGGTTCAAACGACGTCGTAACGAAGGAGTTTTTCCCTGTGACTGGAGGAGGTGAAGGTTTGTCTAATAATTGGAAGTTGCAAACTACGTCGTCGTTTCCGATTAGGAATGGTTCGGTTGATCTATCGTTTGATCAGAGAGAAGAGATGAAGTTTGTTCAGCCTCCACAACAACAAGCTAAAAAGAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAATACAGAGGAGTCACGTTTTACAGAAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTTTATTTAGGTGGATTTGACACAGCTCATGCTGCTGCTAGAGCCTATGATCGAGCTGCTATTAAGTTCAGAGGAGTTGGTGCCGACATAAATTTCAATCTGAATGATTATGATGATGATCTTAAACAGACGAAGAATTTATCGAAAGAGGAGTTTGTGCATATACTTCGTCGTCAAAGTACTGGTTTCTCAAGAGGAAGTTCAAAATACAGAGGAGTAACACTTCACAAGTGTGGCCGTTGGGAAGCTCGAATGGGACAATACCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCATATGACAAAGCAGCTATCCAAAGCAATGGAATGGAAGCAGTGACTAATTTTGAGCCCAGCACATACGAAGGAGAGATGAAATCTGCAGCCATAAATGATGGCAGCAGTCCAAATCTTGATCTCAATTTGGGCATAGCCAAACCAGCACCGGGTCCCAAAGAAAATTGGGGAAAGTTTCACTTCCCCTCTCTCTCTTACACAAGTTCAAGGATGGAAACCAATGTTTCAGGAATCGGTAATTCATCTATAAAAAGGCTATTAGTAACTGAAGAGCGTCACTCTTCACGGAATGACATGCATCCCGGTTTCTTTCCTAATGAGGAAAGAGCAGATGGTATCAACAAAGATCCTTTAAAAGGACTCCCCATTTGGGCGTGGCAAACTAATGGCCAGGTCACTACTACCCCAGTGGCACGGGTCTCTGCAGCAGCATCATCAGGATTCTCAATTTCAGCTCCCTTTCCATCTACTCCATTATTTCCACCAAGATCTATGAACTCAATTCCCCTGAGTCTCTATTTTACATCGCCCAATGCACCTAACAGCAACACATCTCAATAA 1419 0.4419 MLDLNLYDANSADSTQNADSPMISEKFQQTSWNQMMESGTSNSSIVNADADVDGSSNNAGEEDSCSTRVNDVFTISFDILKMEGSNDVVTKEFFPVTGGGEGLSNNWKLQTTSSFPIRNGSVDLSFDQREEMKFVQPPQQQAKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLKQTKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQYLGKKYIYLGLFDSEVEAARAYDKAAIQSNGMEAVTNFEPSTYEGEMKSAAINDGSSPNLDLNLGIAKPAPGPKENWGKFHFPSLSYTSSRMETNVSGIGNSSIKRLLVTEERHSSRNDMHPGFFPNEERADGINKDPLKGLPIWAWQTNGQVTTTPVARVSAAASSGFSISAPFPSTPLFPPRSMNSIPLSLYFTSPNAPNSNTSQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02474 472 SMART rav1_2 155 217 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 SMART rav1_2 247 310 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 CDD AP2 246 306 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 MobiDBLite consensus disorder prediction 133 156 - -
Vivi5g02474 472 CDD AP2 155 210 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 ProSiteProfiles AP2/ERF domain profile. 155 211 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 MobiDBLite consensus disorder prediction 8 23 - -
Vivi5g02474 472 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Vivi5g02474 472 SUPERFAMILY DNA-binding domain 246 305 IPR016177 GO:0003677
Vivi5g02474 472 MobiDBLite consensus disorder prediction 36 65 - -
Vivi5g02474 472 FunFam AP2-like ethylene-responsive transcription factor 154 213 - -
Vivi5g02474 472 Pfam AP2 domain 155 203 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 Pfam AP2 domain 246 293 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 MobiDBLite consensus disorder prediction 1 23 - -
Vivi5g02474 472 Gene3D AP2/ERF domain 154 213 IPR036955 GO:0003700|GO:0006355
Vivi5g02474 472 Gene3D AP2/ERF domain 246 305 IPR036955 GO:0003700|GO:0006355
Vivi5g02474 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 332 - -
Vivi5g02474 472 ProSiteProfiles AP2/ERF domain profile. 247 304 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 PRINTS Ethylene responsive element binding protein signature 286 306 IPR001471 GO:0003700|GO:0006355
Vivi5g02474 472 PRINTS Ethylene responsive element binding protein signature 248 259 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02474 Vivi-Chr5 105052828 105056781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02474 78 330 AP2-EREBP Transcription Factor Family AT4G36920 65.267 1.34e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi5g02474 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02474 K09284 - gmx:100788303 614.379