Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02434 ATGGATTTGGTAACAACTGTCAAGGAGAAATTAACATATTTCCGTATAAAAGAGCTCAAAGATGTGCTGACACAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGACCTCGTTGATCGGATATTATCCATTCTCTCAGATGAGCAAGCTTCCAAATTGTGGTCTAGGAAGAATGCTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGACGACACATATAGGAAAATGCAGATATCAGGGGCCACTGATCTAGCATCAAAGGGTCAGGTTGTGTCAGATAGTAGTAATGTGAAGGTTAAAGCTGAAGTTGACGATTCCCTTCAAATTCAGTCAGCCGCACCTATAACTACAACTACAACTACAACTACAAAGATTCGTTGTCTTTGTGGAAGTACATTGGAAACAGAAGATTTGATCAAGTGCGATGATGCAAGATGCCAAGTGTGGCAACACGTCAGTTGCGTTATTATTCCGGAGAAACCTATGGAAGGCATCCCACCAGTTCCAGATAAATTTTATTGTGAACTATGTCGACTCAGTCGTGCAGACCCGTTTTGGGTTTCAGTATCACATCCTTTGTTACCTGTAAAGTTGACCACAACCAGTATTCCAACTGATGGTTCCAACCCAGTACAGTGCGTGGAGAGAACATTTCAATTCACAAGAGCAGACAAAGACATGGTTTCAAAACAAGAGTTTGATGTTGAGGCCTGGTGTATGCTTCTGAACGACAAGGTTCCATTTAGGATGCAATGGCCACAGTATACAGACCTAGCGGTCAATGGCCTTCCTGTTCGAACAACTAATAGACCCGGTTCACAATTGCTCGGGGCTAATGGTCGCGATGATGGTCCAATTATCACAGCGCATACAAAAGATGGAATTAATAAGATTTCCTTAACAGTATGTGACGCTCGCATTTTTTGTTTAGGTGTTCGCATTGTAAGAAGGCGCAATTTGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGATGGTGAGCATTTTGAAGATGCTCTTGCACGCGTTTGTCGTTGTGTCGGGGGTGGAAATGCAGCTGACAATGCTGACAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTTGGCATTAACCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGTTCAAGAAAATGGCAATGCCCTATATGTCTCAAAAACTATGCATTGGAGAATATCATCATTGATCCTTATTTCAATCGCATCACTTCTCTGATGATTAATTGCGGCGAAGATGTTACAGAGGTTGAGGTTAAACCTGATGGCTCTTGGCGTGTTAAGACAAAGAGTGAAAGTGAACGTCTGGATTTAGGGAATCTTGGCCGATGGCACTTTCCTGATGGATCCCTCTGTGCTTCTACTGATGGAGATATCAAAAGAGTAGAATCATTGAAGCAAGTAAAACAGGAAGGTTTTTCAGACGGACCTGCAGGTTTAAAACTTGGCATTAGAAAGAATCGCAATGGAATTTGGGAAGTTAGTAAGCCGGAGGGTACAAACACCTCTTCTGGTCATAGATTAAAAGAGGTTTTTGGAAATCCTGATCATGTTGTTATTCCAATGAGTAGCAGTGGCACCGGAAGTGGTCGGGATGGTGATGATCCCAGTGTTAACCAGGGTGGCGGCGGGCATATTGATTATTCTACTACCAATGGAGTTGAGATGGATTCTCTGTCTCTCAATAATGTTGATTTACCTAGTGGATATACTGCACATAACACATCAGCTCAGATGGGTGGTGCAGAAGTAATTATTCTTAGCGATTCCGAAGAGGACAACGATATATTGGTGACTCCTGCAATTGCAACTAACAACAACATAAATGGTACTGTGGATGGTTACTCCATGCCACCACCTGGAATTATAGACCCATATGCTGAAGATCAGAATCTCGGTGGAAATTCATGCTTAGGCCTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCTTGTGGCCATTGCCATCAGCAACTCAGACTGGTCCAGGATTCCAATTATTTGGTTCTGATGGAGATGTCACTGATGCATTGGCCCATTTGCAGCATGGTGCTATTAATTGTACCTCACCACTGAATAGTTATGCATTGGCTCCCGAAACTGCTTTGGGATCTAGTAGCCACTTACAAGATTCTTCTGCTGGACGGTCAGATGCTGACTTAAACGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCTTCACTTCAGATTTTTCTCCCTACAAGACCAGGTGAGTCATCTGTGCAGAATGAATCGAGAGATCAATCAAATGTCTCCAATGGTGTCTGCACTGAAGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGCCGGCAGTAATGGCGATGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAGTCCCGGCCAGAGACGGCGGCACTAATACTTTAGCTGATACTGCTTCTTTGCTTCTTGGTATTAATGATGTAAGATCTGACAAAGCAAGTAGACAAAGGTCGGGTAGCCCTTTCACATTTCGTCGCCAAAAACGTTCTGTAAGGCCCCGCCTGTACCTCTCTATTGATGATTCAGATTCGGAATAA 2676 0.429 MDLVTTVKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQASKLWSRKNAVGKEQVAKLVDDTYRKMQISGATDLASKGQVVSDSSNVKVKAEVDDSLQIQSAAPITTTTTTTTKIRCLCGSTLETEDLIKCDDARCQVWQHVSCVIIPEKPMEGIPPVPDKFYCELCRLSRADPFWVSVSHPLLPVKLTTTSIPTDGSNPVQCVERTFQFTRADKDMVSKQEFDVEAWCMLLNDKVPFRMQWPQYTDLAVNGLPVRTTNRPGSQLLGANGRDDGPIITAHTKDGINKISLTVCDARIFCLGVRIVRRRNLQQILNLIPKESDGEHFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFGINLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSLMINCGEDVTEVEVKPDGSWRVKTKSESERLDLGNLGRWHFPDGSLCASTDGDIKRVESLKQVKQEGFSDGPAGLKLGIRKNRNGIWEVSKPEGTNTSSGHRLKEVFGNPDHVVIPMSSSGTGSGRDGDDPSVNQGGGGHIDYSTTNGVEMDSLSLNNVDLPSGYTAHNTSAQMGGAEVIILSDSEEDNDILVTPAIATNNNINGTVDGYSMPPPGIIDPYAEDQNLGGNSCLGLFPNEDDFGMSSLWPLPSATQTGPGFQLFGSDGDVTDALAHLQHGAINCTSPLNSYALAPETALGSSSHLQDSSAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPGESSVQNESRDQSNVSNGVCTEDWISLSLGGGAAGSNGDASTQNGLNSRHQVPARDGGTNTLADTASLLLGINDVRSDKASRQRSGSPFTFRRQKRSVRPRLYLSIDDSDSE 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02434 891 Gene3D SAP domain 1 60 IPR036361 -
Vivi5g02434 891 FunFam E3 SUMO-protein ligase SIZ2 345 459 - -
Vivi5g02434 891 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Vivi5g02434 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 183 IPR013083 -
Vivi5g02434 891 MobiDBLite consensus disorder prediction 553 578 - -
Vivi5g02434 891 SUPERFAMILY FYVE/PHD zinc finger 121 181 IPR011011 -
Vivi5g02434 891 Pfam SAP domain 14 42 IPR003034 -
Vivi5g02434 891 SMART sap_9 11 45 IPR003034 -
Vivi5g02434 891 Pfam PHD-finger 126 178 IPR019787 -
Vivi5g02434 891 CDD PHD_Bye1p_SIZ1_like 126 177 - -
Vivi5g02434 891 CDD SP-RING_Siz-like 372 421 IPR031141 -
Vivi5g02434 891 ProSiteProfiles Zinc finger SP-RING-type profile. 358 441 IPR004181 GO:0008270
Vivi5g02434 891 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 681 - -
Vivi5g02434 891 SUPERFAMILY SAP domain 1 64 IPR036361 -
Vivi5g02434 891 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Vivi5g02434 891 Pfam MIZ/SP-RING zinc finger 371 419 IPR004181 GO:0008270
Vivi5g02434 891 SMART PHD_3 126 178 IPR001965 -
Vivi5g02434 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 459 IPR013083 -
Vivi5g02434 891 ProSitePatterns Zinc finger PHD-type signature. 127 177 IPR019786 -
Vivi5g02434 891 MobiDBLite consensus disorder prediction 814 839 - -
Vivi5g02434 891 MobiDBLite consensus disorder prediction 811 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02434 Vivi-Chr5 103199726 103210073 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi5g02434 PHD 3.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02434 - - gmx:100793735 1471.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g02105 2 97999163 98007146 Vivi5g02434 5 103199726 103210073 PCT