Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02431 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGAGAAGAATGATGCATTATGCATTAAGGAATGTGAAAAAGGTTGCTGTTCTTGTGTTTGTTGTTTGTCCCCTTCCACTTGTTCTTCTTCTAGCTCAACTTCACCTCTTGTTTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTTTGATTTCCCTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCATTTGGAACAGTTTGCTTCTTTCTCTCCTTTTAAGCAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATACAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGTATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACGAAATCAACTCCTCACATGTTCTGCAAGACACTAACAGTTTCTGATACCAGCACTCACGGTGGCTTCTCTGTGCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGTTGCAGAGACCCTCTCAAGAGCTTGTTGCTAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCGAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTAAACCAAAAGAATCTTGTTTCCGGTGATGCTGTCCTCTTTCTAAGGGGTGAAAATGGGGAGCTGAGATTGGGAATCAGAAGAGCTGTAAGACCTAGAAATGGTCTTCCTGAATCGGTTATTGGTAACAAGAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATTTCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCCGAATTTGTTGTTCCATACCCAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAATGAGATTTGAAATGGACGAATCGCCCGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATGAATGATTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTTCGATGGGATGAGGATATGGAGACTAATCATCAAGACCGAATATCTCCGTGGGAGATCGATCCTTCGAATCCTCTGCCTCCTCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCAGTCTGCAGGTTGCCTCGCCCAGTCACCTTACCACTGCAAGAAGCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATACTATGGATGTGACAAAGGAACCAACCAGCCAGGTTTTGATTTGAGCTCTTCGAGTCATCATCGAAATCTCACATCAACCGGAATAGGAAAAGTAGTTACCTCTTCCGAGCTTATGAGTGTTCACCCTTTCGGTTACGCAGGCTTTATGGAAAGTAACAACTTTCCAACGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTAACAGGAAAAGTCGATTTCAATGTCGGCACTTGGGGAAAATCCAGTGCAAGTTGCACACCTTTCAACCTTCATCAAGCAACCAAACAACACAACTTTCAATCTGCATATTTTCCTTATGGAGATATTCACAAAGGTGACCAAGCTAACATGTTTAGCTCAAAACATACCAGTTTCCTTGGAGAGAATGTCGGGTTTAACGCGGCATCGATAGTTGCAGGGAACATTAGAAACGAAGTTGGAAGATCTGAATCTAATCTCCCAATTGAGCATAAGCTGCAAGAAAATATTTCTGTTTCTGCTTCTGCTTCATTAGGGACTACTGATATAAAGGTTCCGAATGATAGCAATGTCAACGGAAAGGTAAACGCCTGCAAACTATTCGGGTTTCCTTTGTCTGCAGAAACTAGTTCTCAAAATTCACAGAACACTGCAAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGTTTAGTTGGAAGAGCCGTTGATCTCTCGAGGTTGAGCGGCTACATTGATCTTCTGAGTGAACTAGAGAAACTATTTGGAATGGATGGCCTTCTTAGAGACTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGTGATGATCCATGGCATGAGTTTTGTGATGTGGTATCGAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGAACAATGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGCTTATTGAACCTTCTAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTTTAA 2415 0.4215 MEIDLNHEVTEIEKNDALCIKECEKGCCSCVCCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLISLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPNYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPESVIGNKNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYPKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDMETNHQDRISPWEIDPSNPLPPLSIQSSPRLKKPRTSLQVASPSHLTTARSSGMMGFEESVRSPKVLQGQENSGFMSLYYGCDKGTNQPGFDLSSSSHHRNLTSTGIGKVVTSSELMSVHPFGYAGFMESNNFPTVLQGQEICKLKSLTGKVDFNVGTWGKSSASCTPFNLHQATKQHNFQSAYFPYGDIHKGDQANMFSSKHTSFLGENVGFNAASIVAGNIRNEVGRSESNLPIEHKLQENISVSASASLGTTDIKVPNDSNVNGKVNACKLFGFPLSAETSSQNSQNTAKRSCTKVHKQGSLVGRAVDLSRLSGYIDLLSELEKLFGMDGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMNNDDTHSCLEQAPVLIEPSKSSSVGQPDYSPTVVRV 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02431 804 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Vivi5g02431 804 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 765 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g02431 804 MobiDBLite consensus disorder prediction 145 164 - -
Vivi5g02431 804 FunFam Auxin response factor 671 765 - -
Vivi5g02431 804 SUPERFAMILY DNA-binding pseudobarrel domain 159 278 IPR015300 -
Vivi5g02431 804 Gene3D - 165 269 IPR015300 -
Vivi5g02431 804 Pfam Auxin response factor 293 375 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g02431 804 FunFam Auxin response factor 165 269 - -
Vivi5g02431 804 CDD B3_DNA 165 267 IPR003340 GO:0003677
Vivi5g02431 804 MobiDBLite consensus disorder prediction 402 436 - -
Vivi5g02431 804 MobiDBLite consensus disorder prediction 390 439 - -
Vivi5g02431 804 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Vivi5g02431 804 Gene3D - 671 765 - -
Vivi5g02431 804 SMART B3_2 167 269 IPR003340 GO:0003677
Vivi5g02431 804 FunFam Auxin response factor 330 403 - -
Vivi5g02431 804 Gene3D - 331 402 - -
Vivi5g02431 804 ProSiteProfiles PB1 domain profile. 676 758 IPR000270 GO:0005515
Vivi5g02431 804 SUPERFAMILY CAD & PB1 domains 671 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02431 Vivi-Chr5 103143790 103148733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02431 49 804 B3 DNA Binding Superfamily AT5G60450 59.558 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g02431 B3 6.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02431 - - gmx:100783513 1249.19