Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02430 ATGGAAATTGATCTGAACCATGAAGTGACTGAAATTGAGAAGAATGATGCATTATGCATTAAGGAATGTGAAAAAGGTTGCTGTTCTTGTGTTTGTTGTTTGTCCCCTTCCACTTGTTCTTCTTCTAGCTCAACTTCACCTCTTGTTTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTTTGATTTCCCTTCCTAAGAAAGGAAATGTTGTGGTTTATTTTCCACAAGGTCATTTGGAACAGTTTGCTTCTTTCTCTCCTTTTAAGCAATTGGAGATACCAAACTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATATACAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAAGTTACTTTGCTTCCTCAGGCTGAGTTGGCAGGTATGCATATGGAGGGAAAAGAAGTTGAGGAATTAGAAGGAGATGAAGAGGGAGATGGAGGGTCACCTACGAAATCAACTCCTCACATGTTCTGCAAGACACTAACAGTTTCTGATACCAGCACTCACGGTGGCTTCTCTGTGCCTCGTAGAGCTGCGGAAGACTGTTTTCCTCCTTTGGATTATAAGTTGCAGAGACCCTCTCAAGAGCTTGTTGCTAAAGACTTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCGAGGCGGCATCTACTCACTACTGGCTGGAGCATTTTTGTAAACCAAAAGAATCTTGTTTCCGGTGATGCTGTCCTCTTTCTAAGTCTCTGTAGGGGTGAAAATGGGGAGCTGAGATTGGGAATCAGAAGAGCTGTAAGACCTAGAAATGGTCTTCCTGAATCGGTTATTGGTAACAAGAACTGTTATCCTAATTTCCTTTCTTCTGTGGCAAATGCTATTTCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCCGAATTTGTTGTTCCATACCCAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATAGGGACAAGATTCAAAATGAGATTTGAAATGGACGAATCGCCCGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATGAATGATTTGGATCCCTATAGATGGCCTAAATCCAAATGGAGGTGCTTGATGGTTCGATGGGATGAGGATATGGAGACTAATCATCAAGACCGAATATCTCCGTGGGAGATCGATCCTTCGAATCCTCTGCCTCCTCTAAGCATTCAGTCTTCTCCAAGACTGAAGAAACCGCGGACCAGTCTGCAGGTTGCCTCGCCCAGTCACCTTACCACTGCAAGAAGCAGTGGAATGATGGGCTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATACTATGGATGTGACAAAGGAACCAACCAGCCAGGTTTTGATTTGAGCTCTTCGAGTCATCATCGAAATCTCACATCAACCGGAATAGGAAAAGTAGTTACCTCTTCCGAGCTTATGAGTGTTCACCCTTTCGGTTACGCAGGCTTTATGGAAAGTAACAACTTTCCAACGGTCTTGCAAGGTCAAGAAATATGTAAACTGAAATCCCTAACAGGAAAAGTCGATTTCAATGTCGGCACTTGGGGAAAATCCAGTGCAAGTTGCACACCTTTCAACCTTCATCAAGCAACCAAACAACACAACTTTCAATCTGCATATTTTCCTTATGGAGATATTCACAAAGGTGACCAAGCTAACATGTTTAGCTCAAAACATACCAGTTTCCTTGGAGAGAATGTCGGGTTTAACGCGGCATCGATAGTTGCAGGGAACATTAGAAACGAAGTTGGAAGATCTGAATCTAATCTCCCAATTGAGCATAAGCTGCAAGAAAATATTTCTGTTTCTGCTTCTGCTTCATTAGGGACTACTGATATAAAGGTTCCGAATGATAGCAATGTCAACGGAAAGGTAAACGCCTGCAAACTATTCGGGTTTCCTTTGTCTGCAGAAACTAGTTCTCAAAATTCACAGAACACTGCAAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGTTTAGTTGGAAGAGCCGTTGATCTCTCGAGGTTGAGCGGCTACATTGATCTTCTGAGTGAACTAGAGAAACTATTTGGAATGGATGGCCTTCTTAGAGACTCTGATAAGGGATGGAGAATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGTGATGATCCATGGCATGAGTTTTGTGATGTGGTATCGAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACATTTGGGATGAACAATGATGATACTCATAGCTGTTTGGAACAGGCACCAGTGCTTATTGAACCTTCTAAGTCTTCCTCAGTTGGTCAGCCAGATTATTCTCCAACAGTAGTTAGAGTTTAA 2424 0.4216 MEIDLNHEVTEIEKNDALCIKECEKGCCSCVCCLSPSTCSSSSSTSPLVSSSYLELWHACAGPLISLPKKGNVVVYFPQGHLEQFASFSPFKQLEIPNYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMHMEGKEVEELEGDEEGDGGSPTKSTPHMFCKTLTVSDTSTHGGFSVPRRAAEDCFPPLDYKLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVNQKNLVSGDAVLFLSLCRGENGELRLGIRRAVRPRNGLPESVIGNKNCYPNFLSSVANAISTKSMFHVFYSPRASHAEFVVPYPKYVKSIKNPVTIGTRFKMRFEMDESPERRCSSGMLIGMNDLDPYRWPKSKWRCLMVRWDEDMETNHQDRISPWEIDPSNPLPPLSIQSSPRLKKPRTSLQVASPSHLTTARSSGMMGFEESVRSPKVLQGQENSGFMSLYYGCDKGTNQPGFDLSSSSHHRNLTSTGIGKVVTSSELMSVHPFGYAGFMESNNFPTVLQGQEICKLKSLTGKVDFNVGTWGKSSASCTPFNLHQATKQHNFQSAYFPYGDIHKGDQANMFSSKHTSFLGENVGFNAASIVAGNIRNEVGRSESNLPIEHKLQENISVSASASLGTTDIKVPNDSNVNGKVNACKLFGFPLSAETSSQNSQNTAKRSCTKVHKQGSLVGRAVDLSRLSGYIDLLSELEKLFGMDGLLRDSDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTFGMNNDDTHSCLEQAPVLIEPSKSSSVGQPDYSPTVVRV 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02430 807 Gene3D - 334 405 - -
Vivi5g02430 807 ProSiteProfiles B3 DNA-binding domain profile. 167 272 IPR003340 GO:0003677
Vivi5g02430 807 SUPERFAMILY DNA-binding pseudobarrel domain 159 276 IPR015300 -
Vivi5g02430 807 Pfam B3 DNA binding domain 167 271 IPR003340 GO:0003677
Vivi5g02430 807 FunFam Auxin response factor 674 768 - -
Vivi5g02430 807 SMART B3_2 167 272 IPR003340 GO:0003677
Vivi5g02430 807 MobiDBLite consensus disorder prediction 405 439 - -
Vivi5g02430 807 MobiDBLite consensus disorder prediction 145 164 - -
Vivi5g02430 807 MobiDBLite consensus disorder prediction 393 442 - -
Vivi5g02430 807 ProSiteProfiles PB1 domain profile. 679 761 IPR000270 GO:0005515
Vivi5g02430 807 FunFam Auxin response factor 165 272 - -
Vivi5g02430 807 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 768 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g02430 807 Gene3D - 674 768 - -
Vivi5g02430 807 CDD B3_DNA 165 270 IPR003340 GO:0003677
Vivi5g02430 807 Gene3D - 165 272 IPR015300 -
Vivi5g02430 807 FunFam Auxin response factor 333 406 - -
Vivi5g02430 807 Pfam Auxin response factor 296 378 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g02430 807 SUPERFAMILY CAD & PB1 domains 674 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02430 Vivi-Chr5 103143790 103148733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02430 49 807 B3 DNA Binding Superfamily AT5G60450 59.197 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g02430 B3 9.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02430 - - gmx:100783513 1243.8