Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02426 ATGATGTCCAAACAACCCTTTTCAGTTTCACCTCATTCCAACACCATGAGAGCTTCTTCATCAAACCATCTTCAAAACCTAAACCAAAACCAAAACCCTAATCCAAATCCAAATCCATCTAAGAAAAAAAGAAACCTACCTGGAACACCAGATCCAGATTCAGAAGTGATAGCCATGTCGCCGAAATCCTTGATGGCGACGAACCGTTTCTTGTGTGAAATCTGCAACAAGGGATTCCAAAGAGACCAGAATTTGCAGCTTCATCGGCGCGGACATAATTTGCCATGGAAGCTGAAGCAAAGAGCTAACAAGGATCAAATTCGGAAGAAGGTTTATGTGTGTCCTGAGAAAAGCTGTGTGCACCATGAACCTTCTAGAGCTTTAGGAGATTTGACAGGAATAAAGAAGCATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTAACAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAAATTTGTGGAACTAGAGAATACAAATGTGATTGCGGCACTATTTTCTCCAGGAGGGACAGCTTCATAACACATAGAGCTTTTTGTGAAGTCTTGACTGAACAAAGTGCAAAGATATCAATACCAACAGTTCCAAGAATTTTTCATAATGATCATTTCACAAGTATTACTCAAACTCCAAGGATTCCTCAAATTTTTCCTGGCTTTCAGTTTCACTCAGAGTTTGTTGGTTCAGGAACATCGTCATCATTATGGCCAGCACTAGAGCAATCAAATTTTCAGCAACTTCATCCTAGTTCATCAGATGTTATGCAAACAATGGACGTGTTTGGATCACAGGCACAGACGCAGACGCAGACACAGACACAGATGCAGTGGTTGAATTATAATAGTAATAATAATAATAATCTATCTTCGCCGATGATGCTACACGGAGTAATGAAGCAAGAGGAAGAAGAAAACAAAGATTTGTCTCATAGTGTAATAAGCTCATTGTACTTGAGTAGTAACCAGAATCAAGAAAGAGGATCAAATCACATGTCAGCAGCAGCAACGACAACGTCACTGTTGGAGACAGAATCTCAAATGGGATCTACAAGGACAGTTATTACTAATGACAACAACAACAACAACAACGACACACTCTTCAACAATGTGAACCACTTTAGCATTGTTGACAAATTCTACAAACAAGGTCATCATCATCATGAAAGTGAAGACTTGAATGAGTTGGTGAATTTGGAAGGAAGTAGCAGAAGCAATTTTGGAGGTGAGTATGCATTAAATGACTCATTTGGGACTGTGAATGGTACCAAGAGTTTGGACCATGTGATGATGTTGGTGGATAGAGAGACAAGAACAACAACAAATGGATATTTACATGATTCAAGTTTGAGGCCAAATGACAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGATGATGATGAGTCAATGAGTAGATCGAGTTTTTTGCAGCAAGAGCTTGATGAGTTTCATGGAATGGGATCATTAGGGAATAATCTGCAGAGCCAGTTTCGTGGTGGTGGAGACTATTGCTAG 1569 0.3932 MMSKQPFSVSPHSNTMRASSSNHLQNLNQNQNPNPNPNPSKKKRNLPGTPDPDSEVIAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKSCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCNKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCEVLTEQSAKISIPTVPRIFHNDHFTSITQTPRIPQIFPGFQFHSEFVGSGTSSSLWPALEQSNFQQLHPSSSDVMQTMDVFGSQAQTQTQTQTQMQWLNYNSNNNNNLSSPMMLHGVMKQEEEENKDLSHSVISSLYLSSNQNQERGSNHMSAAATTTSLLETESQMGSTRTVITNDNNNNNNDTLFNNVNHFSIVDKFYKQGHHHHESEDLNELVNLEGSSRSNFGGEYALNDSFGTVNGTKSLDHVMMLVDRETRTTTNGYLHDSSLRPNDKNQMGFTRDFLGVGDDDESMSRSSFLQQELDEFHGMGSLGNNLQSQFRGGGDYC 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02426 522 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Vivi5g02426 522 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 494 IPR031140 -
Vivi5g02426 522 MobiDBLite consensus disorder prediction 1 43 - -
Vivi5g02426 522 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vivi5g02426 522 Gene3D Classic Zinc Finger 125 205 - -
Vivi5g02426 522 MobiDBLite consensus disorder prediction 356 376 - -
Vivi5g02426 522 FunFam protein indeterminate-domain 12-like 49 118 - -
Vivi5g02426 522 Gene3D Classic Zinc Finger 49 124 - -
Vivi5g02426 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vivi5g02426 522 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vivi5g02426 522 SMART c2h2final6 147 167 IPR013087 -
Vivi5g02426 522 SMART c2h2final6 70 92 IPR013087 -
Vivi5g02426 522 SMART c2h2final6 112 142 IPR013087 -
Vivi5g02426 522 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02426 Vivi-Chr5 102711254 102713807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02426 30 204 IDZ Gene Family AT3G50700 81.714 4.46e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g02426 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02426 K25870 - gmx:100817691 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07134 2 214084732 214087209 Vivi5g02426 5 102711254 102713807 PCT