Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02417 ATGGCTTCCTCAAACAATTCCATAGCAGAAAACAAAAAAGCCAAAAAACCAGAAACCTCAACACCTACCAGCAAAATCAAAAAGGAAAAAGACGTAGAAAAATCCAGTGAGAAGAAGAAGAAGAACAACGAGGAGATCAAAAGCAACAAGAGTAAGAAACTCAAGTTCACCAATGGAAATTCCAAAGAAAAAGAAGAAAACGGAGTAAAACACGAGAACAATGACGAAGAAGAAGGAGGAGGAGATGAAGAAGCGAAAACGAACGTGTTCCCGATGAGTCGAATCAGGACGATAATCAAAGCGGAAATCAGCGATTTGCGTGTTACTCAGGAAGCTATATTGGCGATTAACAAAGCTACGGAGAAGTTTCTTGAACAATTGGCTCTGGAAGCTTATGCTTGTTGTGCTCAGGATCGTAAGAAATATCTGAGTTACAATCACCTATCAAATGTTGTTAGTAAGCAAAAAAGATTCGACTTTCTGTCTGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGACAATCTCAAGAGGGGATAGAGGCGGTTAG 561 0.3957 MASSNNSIAENKKAKKPETSTPTSKIKKEKDVEKSSEKKKKNNEEIKSNKSKKLKFTNGNSKEKEENGVKHENNDEEEGGGDEEAKTNVFPMSRIRTIIKAEISDLRVTQEAILAINKATEKFLEQLALEAYACCAQDRKKYLSYNHLSNVVSKQKRFDFLSDFVPEKVKAEDALRETISRGDRGG 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02417 186 SUPERFAMILY Histone-fold 90 166 IPR009072 GO:0046982
Vivi5g02417 186 MobiDBLite consensus disorder prediction 11 76 - -
Vivi5g02417 186 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 45 178 - -
Vivi5g02417 186 MobiDBLite consensus disorder prediction 1 89 - -
Vivi5g02417 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Vivi5g02417 186 Gene3D Histone, subunit A 28 167 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02417 74 148 CCAAT-HAP5 Transcription Factor Family AT1G07980 45.333 4.59e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vivi5g02417 CBFD_NFYB_HMF 5e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02417 - - vvo:131628524 279.256