Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02408 ATGTTTTCTAAGACTCTTACTTATGTGAAAGCTATGTGGTGTTTTAACTGCTTCGGGTTTTTCAAGAGACGGAATCCTCAGAAGGATAAGCCTGCTGCCATTTACAATAGTAACCTCTCCCGGGAGCTGTTGTTGGATGATGATGATGATTTTGATGACGAAAGGTCCTTCTGTAATGATGAGGTTACTAGCACCACCAGTGGAGATGATAGTGAGGAGCAAAATCGTCCCAAGCGGTCGGAGGATATTTTGGTTTTTAGAGTAGAGAATGGTATGATTTGTAGACAGTTTCCTGTTAAAGAGACTGACAAAGTTTTCCGCACTGAGGATGAAGATGGAAACAAGATGATAAATGAGTATGTTCGTGAGTATAAAATTGGTTCGGGTAGCTATGGGAAAGTGTCTCTTCATCGAAGTCTGGCTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACGGAAGCTTCGAGTTGGACCCTCAGAAACTGCCATGACTGATGTTTTACGCGAGGTTTTCATTATGAAAATGATCCAACATCCTAACATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCGGATCACTTCTACATGGTACTTGAATATGTGGAAGACAAATGGGTTTGCGAGGGTTCAGGTCGAGCTTGTAGCTTAGGTGAAGAGATTGCTAGGAGATACCTGCGGGATATCGTTTCTGGATTAATGTATCTCCATGCTCATAATATAGTTCACGGGGATATCAAGCCTGACAATTTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGTGCTTCGACGATCACCTGGAACTCCTGTTTTCACTGCACCTGAATGTATTTTAGGTCTTACCTACCGAGGTAAAGCTTCAGACACATGGGCCGTAGGAATTACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAGAATAGTCAATAATCCAATAGTGCTCCCGAATGATCTGAATCCGCGGTTAAAGAACTTAATTGAAGGACTTCTTTCCAAAGACCCAAGTCAAAGGATGACGTTGGCTGATGTCGCGGCTGATAGTTGGGTTATTGGAAATGATGGGCCAATTCCCGAGTTCCCGTGTTGGTGCAAAAGGAAGAACTTGGAGAGGAAAGACAGTGATGAGAGCTAG 1227 0.4214 MFSKTLTYVKAMWCFNCFGFFKRRNPQKDKPAAIYNSNLSRELLLDDDDDFDDERSFCNDEVTSTTSGDDSEEQNRPKRSEDILVFRVENGMICRQFPVKETDKVFRTEDEDGNKMINEYVREYKIGSGSYGKVSLHRSLADGKHYAIKAFHKSHLRKLRVGPSETAMTDVLREVFIMKMIQHPNIVNLIEVIDDPESDHFYMVLEYVEDKWVCEGSGRACSLGEEIARRYLRDIVSGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECILGLTYRGKASDTWAVGITLYCMILGEYPFLGDTLQDTYDRIVNNPIVLPNDLNPRLKNLIEGLLSKDPSQRMTLADVAADSWVIGNDGPIPEFPCWCKRKNLERKDSDES 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02408 408 Pfam Protein kinase domain 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02408 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vivi5g02408 408 Gene3D Transferase(Phosphotransferase) domain 1 218 387 - -
Vivi5g02408 408 SUPERFAMILY Protein kinase-like (PK-like) 110 393 IPR011009 -
Vivi5g02408 408 SMART serkin_6 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02408 408 Gene3D Phosphorylase Kinase; domain 1 114 216 - -
Vivi5g02408 408 CDD STKc_LKB1_CaMKK 126 381 - -
Vivi5g02408 408 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 75 383 - -
Vivi5g02408 408 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
Vivi5g02408 408 FunFam Serine/threonine-protein kinase GRIK2 110 408 - -
Vivi5g02408 408 MobiDBLite consensus disorder prediction 59 80 - -
Vivi5g02408 408 ProSiteProfiles Protein kinase domain profile. 120 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02408 Vivi-Chr5 102104319 102108458 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02408 115 388 CBL-interacting serine-threonine protein kinases AT5G35410 31.387 2.31e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vivi5g02408 Pkinase 4.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02408 K00908 - gmx:100789178 619.772