Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02406 ATGTTTTCTAAGACTCTTACTTATGTGAAAGCTATGTGGTGTTTTAACTGCTTCGGGTTTTTCAAGAGACGGAATCCTCAGAAGGATAAGCCTGCTGCCATTTACAATAGTAACCTCTCCCGGGAGCTGTTGTTGGATGATGATGATGATTTTGATGACGAAAGGTCCTTCTGTAATGATGAGGTTACTAGCACCACCAGTGGAGATGATAGTGAGGAGCAAAATCGTCCCAAGCGGTCGGAGGATATTTTGGTTTTTAGAGTAGAGAATGGTATGATTTGTAGACAGTTTCCTGTTAAAGAGACTGACAAAGTTTTCCGCACTGAGGATGAAGATGGAAACAAGATGATAAATGAGTATGTTCGTGAGTATAAAATTGGTTCGGGTAGCTATGGGAAAGTGTCTCTTCATCGAAGTCTGGCTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACGGAAGCTTCGAGTTGGACCCTCAGAAACTGCCATGACTGATGTTTTACGCGAGAATATAGTTCACGGGGATATCAAGCCTGACAATTTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATGTGCTTCGACGATCACCTGGAACTCCTGTTTTCACTGCACCTGAATGTATTTTAGGTCTTACCTACCGAGGTAAAGCTTCAGACACATGGGCCGTAGGAATTACTTTATACTGTATGATATTGGGCGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAGAATAGTCAATAATCCAATAGTGCTCCCGAATGATCTGAATCCGCGGTTAAAGAACTTAATTGAAGGACTTCTTTCCAAAGACCCAAGTCAAAGGATGACGTTGGCTGATGTCGCGGCTGATAGTTGGGTTATTGGAAATGATGGGCCAATTCCCGAGTTCCCGTGTTGGTGCAAAAGGAAGAACTTGGAGAGGAAAGACAGTGATGAGAGCTAG 1014 0.4231 MFSKTLTYVKAMWCFNCFGFFKRRNPQKDKPAAIYNSNLSRELLLDDDDDFDDERSFCNDEVTSTTSGDDSEEQNRPKRSEDILVFRVENGMICRQFPVKETDKVFRTEDEDGNKMINEYVREYKIGSGSYGKVSLHRSLADGKHYAIKAFHKSHLRKLRVGPSETAMTDVLRENIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDDNDVLRRSPGTPVFTAPECILGLTYRGKASDTWAVGITLYCMILGEYPFLGDTLQDTYDRIVNNPIVLPNDLNPRLKNLIEGLLSKDPSQRMTLADVAADSWVIGNDGPIPEFPCWCKRKNLERKDSDES 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02406 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vivi5g02406 337 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 75 173 - -
Vivi5g02406 337 MobiDBLite consensus disorder prediction 59 81 - -
Vivi5g02406 337 FunFam Serine/threonine-protein kinase GRIK1 isoform A 166 317 - -
Vivi5g02406 337 SUPERFAMILY Protein kinase-like (PK-like) 116 322 IPR011009 -
Vivi5g02406 337 SMART serkin_6 120 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02406 337 Gene3D Transferase(Phosphotransferase) domain 1 95 168 - -
Vivi5g02406 337 Pfam Protein kinase domain 173 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02406 337 Gene3D Transferase(Phosphotransferase) domain 1 169 334 - -
Vivi5g02406 337 ProSiteProfiles Protein kinase domain profile. 1 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02406 Vivi-Chr5 102104319 102108459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02406 175 309 CBL-interacting serine-threonine protein kinases AT5G01810 34.058 4.23e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Vivi5g02406 Pkinase 7.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02406 K00908 - ming:122058279 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02406 5 102104319 102108459 Vivi5g02406 5 102104319 102108459 ECH