Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02403 ATGATTTCTGAAGAAAATAATAAACCTGTCACTGATGAAGATCATGATGCTTCTCTTCCTGTTGCTCATAAGGATAGTGATGATTCGAAGGGGATAACGGAAGAAATCACGCATGTTCCTCCCCGGAAGAAGCAGAATCTTCTCTTGGAAATACCAACAAGAACACCAGAAGAGTGTTCACAGGATTATGTTGCAATCAAAATTCCAATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTCGATGCTCCGATGAATAATTCTCCTGGATCTGCAACATCAAAAGGAAAATCATCGTTAAGAAACATCCTACCGAAATTGAGCTTCAGGAGTAGGACACCAGCAGATACTGAAAAGGCGAACGCATCAGCTCCGGATTCAGGCTCTCGAGAAAAGCCTTTGATCTCGAGATCATTGTCGTTTAGTAAGATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAATACTGAATCCACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTTTGAGTAAAAGAGAGACTCGACTTAAGATAGCGCGCTCTCTTTCAATGCCTGCCAACAACAAGAAGGACAAAAGCCTAAGGAGGATGGATTCTTTTTTTCGCGTCGTTTCTTCTACTCCCCGAGTAAAGGAAGGAAATGAATTGTTGAGCAGGTCTCCAGCAAAGGATACTGAAATCGAAGATGCTGAAGATGGCGAAGATATAGCTGAAGAGGAGGCAGTGTGTAGAATTTGTCTGGTTGAATTATGTGAAGGAGGCGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCAAAGAGGATGTTAGAAACCTTCCTGTCACTCTGTTACGGATTCAAAGTGTTCGAAATCGATTTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGTACAGGGTTTGGCAGGAAGTTCCGGTGCTTGTTATTGTTAGCATGTTGGCATATTTTTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTCGGTGTGGTAATGAGTGTAAGCTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACGACAGGCTTCATTAGAGCAACAACATGGCCCTCTACCGATAACACAAGCAGGACAACAGCCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTATAGTGCAAAATTAA 1506 0.4256 MISEENNKPVTDEDHDASLPVAHKDSDDSKGITEEITHVPPRKKQNLLLEIPTRTPEECSQDYVAIKIPMTPSPTPKRVNFLMTSRSVDAPMNNSPGSATSKGKSSLRNILPKLSFRSRTPADTEKANASAPDSGSREKPLISRSLSFSKIFTPRMKRTSSLPLEEIGHSNTESTHGGNGSVGGPLSKRETRLKIARSLSMPANNKKDKSLRRMDSFFRVVSSTPRVKEGNELLSRSPAKDTEIEDAEDGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRNRFTGASRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRRQASLEQQHGPLPITQAGQQPRPANTPRSGESNHNQSIVQN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02403 501 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Vivi5g02403 501 MobiDBLite consensus disorder prediction 167 187 - -
Vivi5g02403 501 SUPERFAMILY RING/U-box 256 310 - -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 1 41 - -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 1 46 - -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 84 113 - -
Vivi5g02403 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 315 IPR013083 -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 468 501 - -
Vivi5g02403 501 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Vivi5g02403 501 CDD RING_CH-C4HC3_MARCH 260 308 - -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 167 181 - -
Vivi5g02403 501 MobiDBLite consensus disorder prediction 84 142 - -
Vivi5g02403 501 SMART ringv_2 259 308 IPR011016 GO:0008270
Vivi5g02403 501 PANTHER OS02G0165000 PROTEIN 26 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02403 Vivi-Chr5 102027386 102030718 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02403 216 314 C3H Transcription Factor Family AT2G37950 35.000 2.17e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02403 - - gmx:100788108 713.375