Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02401 ATGATTTCTGAAGAAAATAATAAACCTGTCACTGATGAAGATCATGATGCTTCTCTTCCTGTTGCTCATAAGGATAGTGATGATTCGAAGGGGATAACGGAAGAAATCACGCATGTTCCTCCCCGGAAGAAGCAGAATCTTCTCTTGGAAATACCAACAAGAACACCAGAAGAGTGTTCACAGGATTATGTTGCAATCAAAATTCCAATGACACCGAGTCCTACTCCTAAGAGAGTGAATTTTCTGATGACTTCTCGGTCGGTCGATGCTCCGATGAATAATTCTCCTGGATCTGCAACATCAAAAGGAAAATCATCGTTAAGAAACATCCTACCGAAATTGAGCTTCAGGAGTAGGACACCAGCAGATACTGAAAAGGCGAACGCATCAGCTCCGGATTCAGGCTCTCGAGAAAAGCCTTTGATCTCGAGATCATTGTCGTTTAGTAAGATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGAAGAAATTGGACATTCAAATACTGAATCCACTCATGGTGGAAATGGAAGTGTTGGTGGTCCTTTGAGTCAGAAAAGAGAGACTCGACTTAAGATAGCGCGCTCTCTTTCAATGCCTGCCAACAACAAGAAGGACAAAAGCCTAAGGAGGATGGATTCTTTTTTTCGCGTCGTTTCTTCTACTCCCCGAGTAAAGGAAGGAAATGAATTGTTGAGCAGGTCTCCAGCAAAGGATACTGAAATCGAAGATGCTGAAGATGGCGAAGATATAGCTGAAGAGGAGGCAGTGTGTAGAATTTGTCTGGTTGAATTATGTGAAGGAGGCGAGACATTCAAGTTGGAATGTAGCTGCAAAGGTGAACTTGCTTTGGCTCACCAAGAATGTGCCATTAAATGGTTTAGTATAAAGGGTAATAGAACTTGTGATGTCTGCAAAGAGGATGTTAGAAACCTTCCTGTCACTCTGTTACGGATTCAAAGTGTTCGAAATCGATTTACTGGAGCAAGTAGATCTCAGCTCGAAGATGTAAACGGGGTTTGGCAGGAAGTTCCGGTGCTTGTTATTGTTAGCATGTTGGCATATTTTTGTTTTCTTGAGCAACTGTTGGTTACAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTAGGCCTGCTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATATGGATTTATGCATCTTTCCAGTTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTATCAATCCTTCTTGCAACATTTGCTGGTTTCGGTGTGGTAATGAGTGTAAGCTCTTTCCTTGTTGAGCTTTTTAGATGGAGAAGGAGACGACAGGCTTCATTAGAGCAACAACATGGCCCTCTACCGATAACACAAGCAGGACAACAGCCTCGGCCTGCAAACACGCCACGATCAGGTGAATCCAACCACAATCAATCTATAGTGCAAAATTAA 1503 0.4258 MISEENNKPVTDEDHDASLPVAHKDSDDSKGITEEITHVPPRKKQNLLLEIPTRTPEECSQDYVAIKIPMTPSPTPKRVNFLMTSRSVDAPMNNSPGSATSKGKSSLRNILPKLSFRSRTPADTEKANASAPDSGSREKPLISRSLSFSKIFTPRMKRTSSLPLEEIGHSNTESTHGGNGSVGGPLSQKRETRLKIARSLSMPANNKKDKSLRRMDSFFRVVSSTPRVKEGNELLSRSPAKDTEIEDAEDGEDIAEEEAVCRICLVELCEGGETFKLECSCKGELALAHQECAIKWFSIKGNRTCDVCKEDVRNLPVTLLRIQSVRNRFTGASRSQLEDVNGVWQEVPVLVIVSMLAYFCFLEQLLVTKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASFQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSVSSFLVELFRWRRRRQASLEQQHGPLPITQAGQQPRPANTPRSGESNHNQSIVQN 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02401 500 SMART ringv_2 260 309 IPR011016 GO:0008270
Vivi5g02401 500 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Vivi5g02401 500 SUPERFAMILY RING/U-box 257 311 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 1 41 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 1 46 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 467 500 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 84 113 - -
Vivi5g02401 500 CDD RING_CH-C4HC3_MARCH 261 309 - -
Vivi5g02401 500 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Vivi5g02401 500 PANTHER OS02G0165000 PROTEIN 26 468 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 167 186 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 84 142 - -
Vivi5g02401 500 MobiDBLite consensus disorder prediction 167 188 - -
Vivi5g02401 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 316 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02401 Vivi-Chr5 102027386 102030719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02401 217 315 C3H Transcription Factor Family AT2G37950 35.000 2.12e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02401 - - gmx:100788108 699.123