Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02393 ATGGCTAAAGATGTTGAGGTTCAAGAACAAGGTGAATACTCTGCAAAAGATTACCAAGATCCACCTCCAGCACCATTGATAGACCTTGACGAGTTAACAAAGTGGTCCTTTTACAGAGCTCTTATAGCTGAATTCGTAGCAACACTTCTCTTCCTTTATATCACTATTTTAACCATCATTGGTTATAGCCACCAGACTGACGCTAGCGCTGGTGGCACCGACTGTGATGGCGTTGGCATTCTCGGTATTGCCTGGGCTTTTGGTGGCATGATTTTCATCCTGGTTTACTGCACCGCTGGTATCTCTGGAGGACACATAAACCCTGCGGTGACATTCGGACTATTTGTGGGACGAAAAGTGTCATTATTAAGGGCAATATTCTACATAGCAGCACAGTCTGCAGGTGCAATCTGTGGTACCGGACTAGCCAAAGGTTTCCAAAAATCATACTTTGACAGGTACGGTGGTGGTGCCAACTTTATCCATGATGGTTACAACAAAGGTACAGCTTTGGGTGCTGAGATTATTGGTACCTTTGTTCTTGTCTACACCGTCTTCTCTGCAACTGATCCTAAAAGAAACGCCAGAGACTCTCATGTTCCTGTTTTGGCACCATTACCTATTGGATTTGCTGTTTTCATGGTTCATTTGGCTACTATTCCGATCACCGGTACTGGTATTAACCCGGCAAGAAGTTTCGGATCCGCTGTTATCTTAAACCAGGATAAAATTTGGGATGATCAGTGGGTTTTCTGGGTTGGACCAATAATTGGAGCAACAGTGGCTGCAATTTACCACCAATACATTCTAAGAGGATCAGCGATTAAAGCTCTTGGATCATTCAGGAGCAATGCTTAA 858 0.4394 MAKDVEVQEQGEYSAKDYQDPPPAPLIDLDELTKWSFYRALIAEFVATLLFLYITILTIIGYSHQTDASAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLLRAIFYIAAQSAGAICGTGLAKGFQKSYFDRYGGGANFIHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVILNQDKIWDDQWVFWVGPIIGATVAAIYHQYILRGSAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02393 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Vivi5g02393 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 274 IPR034294 -
Vivi5g02393 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 SUPERFAMILY Aquaporin-like 31 270 IPR023271 -
Vivi5g02393 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g02393 285 FunFam Probable aquaporin PIP1-2 24 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02393 Vivi-Chr5 101874244 101875927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02393 1 283 Major Intrinsic Protein MIP AT5G60660 78.445 1.09e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02393 K09872 - gmx:100818032 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07161 2 214573528 214575518 Vivi5g02393 5 101874244 101875927 PCT