Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02386 ATGGCTATGGCTGTGGCTCATCATAGAGAGAGTAGTAGCAGTGGTGGAAGCATTGATAAGCATCTTGATTCAGGGAAATATGTTAGGTACACTTCTGAACAAGTTGAGGCTTTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTAGAGAGTGTCATATTCTTTCCAACATTGAACCTAAACAAATCAAGGTTTGGTTCCAAAATAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCAAGACTTCAGACTGTGAATAGGAAGTTGTCTGCAATGAACAAGTTGTTGATGGAAGAGAATGATAGGTTGCAGAAACAAGTTTCACAGCTTGTGTGTGAGAATGGATTTATGAGGCAGCAGTTGCATACTCCATCAGCAGCAGCAACAACTGATGCGAGCTGTGATTCGGTTGTTACTACTCCTCAGAATTCCAAGAGAGATGCTAATAACCCTGCTGGACTCCTATCGATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCGATTTCACAAAGTTGTAGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTTTATCTTGGTTTCGAGAGTGTCGGAACCTTGAAGTTTTCACAATGTTTCCTGCCGGAAATGGAGGAACCATTGAGCTTATTTACACTCAGACATATGCTCCAACGACGCTGGCTCCCGCCCGGGATTTCTGGACTCTGAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCCTTGTCCGGTTCTGGCACTGGCCCTAATCCAGCTGCTACTGCTCAGTTTGTAAGGGGTGAAATGCTCCCTAGTGGCTACTTGATTCGACCGTGTGATGGCGGAGGTTCAATTATCCATATTGTAGACCACCTAAATCTTGAGCCTTGGAGTGTGCCAGAAGTACTACGACCGCTTTATGAATCACCAAAAGTTGTGGCCCAAAAAATGACAATTGCGGCACTTCGATATATTAGGCAAATAGCTCAGGAAACGAGTGGCGAAGTAGTATATGGATTAGGTAGACAACCTGCTGTTTTGCGAACATTCAGCCAACGATTGAGCAGAGGCTTCAATGATGCTGTAAATGGATTCAACGATAATGGGTGGTCTATACTGAACTGTGATGGCGCTGAGGATGTAATTATTGCTGTTAATTCAACCAAGAATTTAAGTAGCACTTCTAATCCAGCAAGTTCCCTTACATTCCTCGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTCCAAAACGTTCCTCCTGCAGTTTTGGTTCGCTTCCTAAGGGAGCACCGCTCAGAATGGGCTGATTTCAACGTCGATGCTTATTCCGCTGCATCACTGAAAGCTGGAAACTATGCCTATCCAGGGATGAGGCCAACAAGATTCACCGGCAATCAAATAATCATGCCACTTGGTCAGACAATTGAACATGAAGAGATGCTTGAGGTTATTAGGCTTGAAGGCCACTCTCTTGCTCCAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAAATATGCAGTGGGACTGATGAGAATGCTGTTGGGACTTGTTCAGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTACCTTCCGGTTTCCGCATCATTCCGTTGGACTCAAAACCAGGTGATAAGAAGGATGCAGCAAATTCAAACCGAACACTGGATTTGACATCAGGTCTTGATGTGGGCGCAGCAACATCTCAAGGTGGTGCAGATTCATCCAGTCAAAGCACACGATCGGTGTTGACTATTGCCTTTCAGTTCCCTTTCGACAGCACCATGCAAGATAATGTTGTAATAATGGCACGTCAATATGTTCGTAGTGTGATTTCCTCTGTGCAGAGGGTTGCCATGGCTATTTCTCCGTCTGGTATAAATTCATCTGTTGGAACAAAACTTTCTCCCGGTTCTCCAGAAGCAGTTACACTAGCTCACTGGATCTGCCAGAGTTATAGTTGCTATTTGGGGACAGAATTACTTAGATCAGATTCTCTCGTTGGTGACTTGATGCTAAAACAGCTGTGGCATCACCCGGACGCCATTCTATGTTGTTCACTCAAGTCGCAGCCGGTGTTTGTCTTTGCAAATCAAGCCGGCCTTGACATGTTGGAAACTACTCTAGTGGCTTTACAAGACATCACATTGGACAAAATATTTGACGAGTCCGGGCGCAAGGCATTATGTTCAGACTTCGCCAAGTTAATGCAACAGGGTTTTGCTTATCTGCCAACTGGGATCTGCATGTCTACGATGGGACGGCATGTTTCATACGAGCAAGCCATTGCATGGAAAGTGTTAACACCAGAAGATAACTCTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2535 0.4469 MAMAVAHHRESSSSGGSIDKHLDSGKYVRYTSEQVEALERVYAECPKPSSMRRQQLIRECHILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAAATTDASCDSVVTTPQNSKRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRLSWFRECRNLEVFTMFPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGTGPNPAATAQFVRGEMLPSGYLIRPCDGGGSIIHIVDHLNLEPWSVPEVLRPLYESPKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSILNCDGAEDVIIAVNSTKNLSSTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGNYAYPGMRPTRFTGNQIIMPLGQTIEHEEMLEVIRLEGHSLAPEDAFVSRDIHLLQICSGTDENAVGTCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDAANSNRTLDLTSGLDVGAATSQGGADSSSQSTRSVLTIAFQFPFDSTMQDNVVIMARQYVRSVISSVQRVAMAISPSGINSSVGTKLSPGSPEAVTLAHWICQSYSCYLGTELLRSDSLVGDLMLKQLWHHPDAILCCSLKSQPVFVFANQAGLDMLETTLVALQDITLDKIFDESGRKALCSDFAKLMQQGFAYLPTGICMSTMGRHVSYEQAIAWKVLTPEDNSVHCLAFSFINWSFV 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02386 844 Coils Coil 91 122 - -
Vivi5g02386 844 Gene3D - 200 382 IPR023393 -
Vivi5g02386 844 Pfam START domain 166 373 IPR002913 GO:0008289
Vivi5g02386 844 Gene3D - 19 92 - -
Vivi5g02386 844 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Vivi5g02386 844 SUPERFAMILY Homeodomain-like 25 88 IPR009057 -
Vivi5g02386 844 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g02386 844 SUPERFAMILY Bet v1-like 165 377 - -
Vivi5g02386 844 CDD homeodomain 26 86 IPR001356 GO:0003677
Vivi5g02386 844 Pfam MEKHLA domain 700 843 IPR013978 -
Vivi5g02386 844 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Vivi5g02386 844 SMART START_1 165 375 IPR002913 GO:0008289
Vivi5g02386 844 CDD bZIP 78 117 - -
Vivi5g02386 844 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Vivi5g02386 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 22 844 IPR044830 GO:0003700
Vivi5g02386 844 CDD START_ArGLABRA2_like 160 376 - -
Vivi5g02386 844 SMART HOX_1 23 89 IPR001356 GO:0003677
Vivi5g02386 844 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02386 Vivi-Chr5 101517050 101522290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02386 1 844 Homeobox Transcription Factor Family AT5G60690 81.316 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi5g02386 START 8.3e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02386 K09338 - gmx:100804870 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02386 5 101517050 101522290 Vivi5g02386 5 101517050 101522290 ECH