Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02383 ATGAAGGAAGGTGAAAAAGGGTTTTTGGATCCACAGTTATGGCACGCTTGTGCTGGTGGAATGGTTCAGATACCTCAGGTGAATACCAAAGTTTTCTACTTTCCACAAGGGCATGCTGAACATGCTAACACAAACATTGATCTGAGGGTTTCGGTTCCTTCGCTGATTCTGTGTAAAGTTGTTGATGTTAAGTTTATGGCTGACCCGGAAACTGATGAGGTTTTTGCTATAATGAAGCTTCTGCCTTTGAGAAACTCAGAGGTTGGTTACATTGAAGAAGGTGTTGGTGGTGGTGGTGGTGGTGATGGTTTGGGGAATTCTGAAAAGCCTGCTTCTTTTGCGAAGACTTTGACTCAATCTGATGCAAACAATGGTGGAGGGTTTTCTGTTCCGAGATATTGCGCTGAGACGATCTTTCCGCGGCTGGATTACGCGGCTGAGCCGCCTGTTCAGACGGTGGTGGCGAAGGATGTTCATGGCGAGCTTTGGAAGTTTAGGCATATATATCGAGGGACACCGCGTAGGCACTTGCTTACGACAGGGTGGAGTAGTTTTGTGAACCAGAAGAAGCTTGTTGCTGGTGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGTGAATTGTGTGTCGGAATTCGAAGGGCGAAGAAGGGAATTGGTAGTGGTTTTGATGGTTCATCTTGTGGTTGGACTTCGGGTTCGGGTTCTAACAGTGTTAATTGTGGGATTGGGCCTTTTGGGGCGTTTTCGTTTTTCTTGAAAGAGGAGAATAAGGCATTGAGAAATGGTTGTGTTGGTGTTGGTGGTGATGTGAGTGGAAGAGTTAAAGTGAGGCATGAAGATGTTATGGAAGCTGTGAAATTGGCTGCTAATAACCAACCATTTGAAGTTGTTTACTATCCGAGAGCAAGCACTCCCGAGTTTTGTGTTAAGGCTTCATCTGTTCGAGCTGCTATGAGGATTCAATGGTGTTCCGGGATGAGGTTCAAGATGCCGTTTGAAACCGAAGACTCGTCTAGGATTAGTTGGTTCATGGGAACCATTGCTTCTGTTCATGTTGTCGATCCTATTCGCTGGCCTAATTCCCCGTGGCGCCTTCTTCAGGTTACATGGGACGAGCCGGATTTACTACAAAATGTGAAGTGTGTTAGTCCGTGGTTGGTCGAACTGGTATCAAACATACCGGTCCTTCATTTCACACCATTCACTCCACCGAGGAAGAAGCTGCGGTTTCCTCAAAACCTCGACTTCCCCCTCGGCGTTCAATTTCCGTCACCGACGTTTTCAGGCAACCAGCTCGGGCCAAACGGTCCTTTCTTCGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCAAGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAGCAACAATAAACTTCAGTTAGGGTTGTTTCCGACAAATGTTCAGCACGTTGACGTGCGTACTAGGATTTCAAACGGAAACAACATGATCAACAATGATAAGAACAAAGAAAGCTTATCGTGCTTGTTGTCCATAGGGAAAAAGTCTGATAAGAGTTTGGAGAAATCTCAATCTGATGATGTTGTTGTTGTTAAGAAACATCAGTTTTTTCTTTTCGGTCAGCCGATACTCACTGAGCAACAAATTTCCAAAAACTGTTCTAAAGATGTAGTAGTAGATGAGAGTAAGAACAAAGAGAAGTGGTTTCTGGATGCAGTTTCAGCAGGAAAAGGTTCTGATGCTGCAGAGTTCAGTTGGCAACTTGGGCTGGACATTGGTCACTGCAAGGTTTTCTTGGAGTCAGAAGATGTTGGAAGGACACTCGATTTATCACTTCTTGGTTCTTATGAAGAGCTCTACAAGAAACTGGCAAACATGTTTGATTTAGAGAAATCTGAGATGTTGACTCGCGTGTTCTACCGCGATGCAACAGGTGCTGTGAAACAAACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGTCAACAAAAATGTTAGAGGGGCTTGGATTACAGGAACTAGAAATGGTGAACATGGACTGGATGCATCAAACAAAACAGGTCCTCTAAGCATAATTGCTTAA 2115 0.444 MKEGEKGFLDPQLWHACAGGMVQIPQVNTKVFYFPQGHAEHANTNIDLRVSVPSLILCKVVDVKFMADPETDEVFAIMKLLPLRNSEVGYIEEGVGGGGGGDGLGNSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGSGFDGSSCGWTSGSGSNSVNCGIGPFGAFSFFLKEENKALRNGCVGVGGDVSGRVKVRHEDVMEAVKLAANNQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVHVVDPIRWPNSPWRLLQVTWDEPDLLQNVKCVSPWLVELVSNIPVLHFTPFTPPRKKLRFPQNLDFPLGVQFPSPTFSGNQLGPNGPFFGLSDNAPACIQGARQAQFGGISLSDLNLSNNKLQLGLFPTNVQHVDVRTRISNGNNMINNDKNKESLSCLLSIGKKSDKSLEKSQSDDVVVVKKHQFFLFGQPILTEQQISKNCSKDVVVDESKNKEKWFLDAVSAGKGSDAAEFSWQLGLDIGHCKVFLESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLTRVFYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSVNKNVRGAWITGTRNGEHGLDASNKTGPLSIIA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02383 704 FunFam Auxin response factor 111 215 - -
Vivi5g02383 704 SUPERFAMILY DNA-binding pseudobarrel domain 108 214 IPR015300 -
Vivi5g02383 704 FunFam Auxin response factor 322 395 - -
Vivi5g02383 704 CDD B3_DNA 112 213 IPR003340 GO:0003677
Vivi5g02383 704 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Vivi5g02383 704 Gene3D - 111 215 IPR015300 -
Vivi5g02383 704 Gene3D - 592 676 - -
Vivi5g02383 704 Gene3D - 322 394 - -
Vivi5g02383 704 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi5g02383 704 ProSiteProfiles PB1 domain profile. 592 675 IPR000270 GO:0005515
Vivi5g02383 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi5g02383 704 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Vivi5g02383 704 SMART B3_2 113 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02383 Vivi-Chr5 101353985 101357694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02383 3 677 B3 DNA Binding Superfamily AT2G28350 56.620 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi5g02383 B3 2.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02383 - - gmx:100814686 1014.6