Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02381 ATGTCACATGGGGCAACTAAGAAAAAGAGGCAAAGATTCATTTATATTACAGTTAGGACAGCTCAGACCCGACAGCATCATCAAGTCCAGCAGATAAGGGCTTCCTCATCTCTTCATCCTTCACTCCACCGCCACCGCCGTTCAAATTTCCAACCATTTGCTTCACTTCTGGATAATGCTAGTATGAAGAACTGTTGGTTTTTTGACAACAATTTCAACGGTGTGTCGGATGAGATTCTTGGTGATGTTGTTGAGTTTTTTGATTTCCAAGTTGATGATGTGGGAACTGATGGTGTGGAACAAGATTGGAATGATCAATTCAAACACATTGAAGAGCCATCTCTTGGTGTTTTTTCAGTACCGCCGTCGTTTGATTTGTGCGGCGAAAGGCAAAATGAGAAACCAAATCTTGTGAACTGTTTCTCTACTTCTGAACTTTCTCATATTGACAGAAGAAATATTGTTAATTCGAGCTTCAAAGAACGACGAGGACTACTGCCGAAGACTGCCGGCCCTAGATATGGAAAAACTATACCTATCCAAAACTACCCTTTCAAGGGAACAAATTTGCTCCAATGCCAAACATACAGCCCGGTTTCAGTTTTCGAAAGCAGTAGTTATTCTTCAGTTGAGAATTCCATCTTTGAGTTACCAGTGATCCCAACAAAGCGTCCTCGCAGTAAACGTCGGCGTCTCTCATGCTTCAACAAGCTCTTAATTCCATTCATACCTCCTTTTCAAAAACATCAATCCAAAACACAGCGTGCTGGTAAGCCAAGGAAAAAGGATACCTCGCAGCGCAGAGTCCAAAGAAAGCCAAGGAAAAAGGATATCTCACAGCGCTCCGATGATATAAACATGAAGAGATCATCATTACAGGAATCAGCTGCCCCCAGAAAATGTACGCATTGCGAAGTGACAGAGACTCCGCAATGGAGAGAGGGGCCTAAAGGTCCGAAGACCCTATGCAACGCGTGTGGAGTTCGATACAGGTCGGGCCGCCTCTTTCCTGAATACAGGCCTGCAGCTAGCCCAACCTTTGAAGCATCAGTGCACTCAAATTCTCACAAGAAGGTTATAGAAATCAGGAACAAGGTGAACAAAGAGACTGATAAAGGTTCTTCTGTTTTGTATTTATCATCAAATCTTTCAGGAAATTTTCTAGGATAA 1170 0.4291 MSHGATKKKRQRFIYITVRTAQTRQHHQVQQIRASSSLHPSLHRHRRSNFQPFASLLDNASMKNCWFFDNNFNGVSDEILGDVVEFFDFQVDDVGTDGVEQDWNDQFKHIEEPSLGVFSVPPSFDLCGERQNEKPNLVNCFSTSELSHIDRRNIVNSSFKERRGLLPKTAGPRYGKTIPIQNYPFKGTNLLQCQTYSPVSVFESSSYSSVENSIFELPVIPTKRPRSKRRRLSCFNKLLIPFIPPFQKHQSKTQRAGKPRKKDTSQRRVQRKPRKKDISQRSDDINMKRSSLQESAAPRKCTHCEVTETPQWREGPKGPKTLCNACGVRYRSGRLFPEYRPAASPTFEASVHSNSHKKVIEIRNKVNKETDKGSSVLYLSSNLSGNFLG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02381 389 FunFam GATA transcription factor 291 376 - -
Vivi5g02381 389 SMART GATA_3 295 345 IPR000679 GO:0006355|GO:0043565
Vivi5g02381 389 MobiDBLite consensus disorder prediction 246 298 - -
Vivi5g02381 389 MobiDBLite consensus disorder prediction 253 275 - -
Vivi5g02381 389 ProSitePatterns GATA-type zinc finger domain. 301 326 IPR000679 GO:0006355|GO:0043565
Vivi5g02381 389 Pfam GATA zinc finger 301 334 IPR000679 GO:0006355|GO:0043565
Vivi5g02381 389 Gene3D - 291 370 IPR013088 GO:0006355|GO:0008270
Vivi5g02381 389 CDD ZnF_GATA 300 357 IPR000679 GO:0006355|GO:0043565
Vivi5g02381 389 PANTHER GATA TRANSCRIPTION FACTOR 99 368 - -
Vivi5g02381 389 ProSiteProfiles GATA-type zinc finger domain profile. 295 331 IPR000679 GO:0006355|GO:0043565
Vivi5g02381 389 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 297 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02381 Vivi-Chr5 101053797 101056986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02381 69 371 C2C2-Gata Transcription Factor Family AT1G08010 35.831 1.42e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi5g02381 GATA 6.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02381 - - vvo:131601889 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07177 2 214907089 214912776 Vivi5g02381 5 101053797 101056986 PCT