Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02356 ATGAGCTTGGAAGGTAGAAACCAAATGCAGATACTCGTGGATGGGGAAACCGTAGAGGCACTCGAAGAGAATTATAATATCCAGGAAACTATGACTGAAAATAATAAAGAAAGAAGTTCAAATAGTTTTTCGGGACATATTCCTAATGTCCATGAACATGGTAATCCTTATCCTCGTATTGGGCTAGAATTCGATTCTGCTGAGGATGTTAAAAAATTTTACATAGCCTTTGCAAAGGAACAAGGATTCGGAATCCGTACTCGTTCAAGTAAGAAAAACTTATGCATATTTGTATGCTCTAATGCTGGTCAACGTATATCCAACAATATCAGTAACTATAAAAGTAATATAGTCATGGAAAAAGGTAGGAATAGGTGCTCAACTTCAAGAACCGATTGCAAGGCAACACTTATTACTTCAAAAGCACGGAACAGACATAAATGGTCCATCATTGGTTTTAAAAATGATCATAACCATGATATGGTAAGCCCAAAGAGTGTGAAGTATCTTAGATGTCATAAAAAAATGAGTGCATCAGTAAAGAACCTTGTTGAGAAGTTTAATCAAGAAGGTTTACCAACAGGGAAAGTTGCTGCCATGTTCAATAAGGGAGGTGAGTCATTCTCTAATAGAGATTGTTGGAATCATCTTAGAGATCTTCGATCTAGAAATTTAGATGTTGGAGATGCTCAAGCAGTATTCAATTTCTGTAAGAAAAAACAGGTTGAGAATTCAAATTTCTTTTATGCAATACAATGTGACAATGATGATAGGATGGTTAACTTCTTTTGGGTTGACGCAAGATCAAGATCTGCATATAGTTTGTTTGGAGATGTTGTTACATTTGATACAACATACAAAACCAACAAGTATTGTATGCCGTTTGCTCCTTTCACTGGGTTGAATCATCATCACCAGTCTATTTTATTTGGTTGTGCATTGTTACAAGATGAAACAGAGAAGTCCTTCACGTGGCTGTTTGAAAATTGGCTTGAGGCAATGGGTGGAAAAAGTCCACTTTCAATAATTACTGATCAAGACATGGCAATGAGAGCTGCAATATCTAAGGTTTTTCCACATACTCGACATCGTTTATGTTTATGGCACATCAGAAAAAAATTTCCAGAGAAGCTTTCACACATATACCATAAAAGCTCTAAGTTCAAGCGTGATCTTAAAAGATGTATTCGTGATTCATCCTGCATACGCGATTTTGAAGATGATTGGAATCATATAATGGTCGAATATGATTTGGAGAAAAACGAATGGCTTCAAGGTTTATACAATATAAGAGAGTCTTGGATTCCTGTTTATAATAGAAATACTTTTTTTGCCGGGATGAATACTACACAAAGGAGTGAAAGCATCAATGCTTTTTTTGATTCTTTTGTTGATTCATCAACCACACTGCGAGATTTTGTAGTAAATTTTGACAAAGCAGTAGACAGCCGCTATGAGAAAGAAAGAAAAGAAGACTTTGAATCTAGGCATCGCTCACGCATCTTTAGTGTGAGATCCAAAATTGAAGAGCACGCTGCAAGTGTTTATACAAGAAACATCTTTAATAAATTCAAAGATGAGCTCACAACGGTTAGTCAATTTATAAAGGAAAAAGTTGAAAAAAATGGATCTCAATATACTTATAAGGTGTCCAATTGTTTTAAGTCTCAAGATTCATTTACTGTGACTGTGAATCTTGATACAAAGGAGGCTAAATGTGGCTGCCAACTTTATGAGTTTATGGGGATATTGTGCAGGCATATCTTAGTAATCTATCAAGCAAAAAATATTGTAGAAATTCCAAATAACTATATTTTACAACGTTGGACAAAAGATGCTAATAAGAGCTTTGGATTTGGTCCAGGTGAAATAAAATTGGTATGCGAGAGTAGTAACTCAACAACTTTGCGAAGTATGCACGTGCGTAGCCTAACACAGTTGTTATGTGATCTTGCTGAAAAATCAGAGAAAGCTGAAAAATCAGAGAAAGTATACAAGTTTATTTTATCAGAATTGGAACAGTTGTATAAGAAAGCTGCAATGATGGATTATGAAATGCAGGGAAGCACAAACACTTTTTCGGAGGAAGTTAATGAGGAGTATGAATTAAATATTAGAGATCCAATAATTTCACAAACTAAAGGCCGGAAAAAGGATGATGTTAGAGTGTCTCAATCAGCGAGGATCAAGAGTAGTTTAGAGTTGTCAATGAATCAACTCTCTACCAAAAGACGGTCTTGTCAAATGTGTGGAGAACATGGTCATAATCGTAGAAGTTGCAAGTTAAAATTAAGTGAGGAAGAAGTTAATCTATCTACTTAA 2322 0.3523 MSLEGRNQMQILVDGETVEALEENYNIQETMTENNKERSSNSFSGHIPNVHEHGNPYPRIGLEFDSAEDVKKFYIAFAKEQGFGIRTRSSKKNLCIFVCSNAGQRISNNISNYKSNIVMEKGRNRCSTSRTDCKATLITSKARNRHKWSIIGFKNDHNHDMVSPKSVKYLRCHKKMSASVKNLVEKFNQEGLPTGKVAAMFNKGGESFSNRDCWNHLRDLRSRNLDVGDAQAVFNFCKKKQVENSNFFYAIQCDNDDRMVNFFWVDARSRSAYSLFGDVVTFDTTYKTNKYCMPFAPFTGLNHHHQSILFGCALLQDETEKSFTWLFENWLEAMGGKSPLSIITDQDMAMRAAISKVFPHTRHRLCLWHIRKKFPEKLSHIYHKSSKFKRDLKRCIRDSSCIRDFEDDWNHIMVEYDLEKNEWLQGLYNIRESWIPVYNRNTFFAGMNTTQRSESINAFFDSFVDSSTTLRDFVVNFDKAVDSRYEKERKEDFESRHRSRIFSVRSKIEEHAASVYTRNIFNKFKDELTTVSQFIKEKVEKNGSQYTYKVSNCFKSQDSFTVTVNLDTKEAKCGCQLYEFMGILCRHILVIYQAKNIVEIPNNYILQRWTKDANKSFGFGPGEIKLVCESSNSTTLRSMHVRSLTQLLCDLAEKSEKAEKSEKVYKFILSELEQLYKKAAMMDYEMQGSTNTFSEEVNEEYELNIRDPIISQTKGRKKDDVRVSQSARIKSSLELSMNQLSTKRRSCQMCGEHGHNRRSCKLKLSEEEVNLST 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02356 773 ProSiteProfiles Zinc finger CCHC-type profile. 747 761 IPR001878 GO:0003676|GO:0008270
Vivi5g02356 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 680 IPR031052 GO:0006355
Vivi5g02356 773 Pfam FAR1 DNA-binding domain 72 162 IPR004330 -
Vivi5g02356 773 Pfam SWIM zinc finger 562 596 IPR007527 GO:0008270
Vivi5g02356 773 SMART 26again6 571 598 IPR006564 GO:0008270
Vivi5g02356 773 Pfam MULE transposase domain 279 373 IPR018289 -
Vivi5g02356 773 ProSiteProfiles Zinc finger SWIM-type profile. 560 596 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02356 Vivi-Chr5 100097181 100099592 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi5g02356 MULE 5.2e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02356 - - vvo:131633311 877.085