Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02352 ATGAAGTCACAGATCAAAATTGCTCTTGCTATTATTATTAGTTTGCTCTGGATTCAACACTCCTTTTGTGATGAAGCATCTGATACATCCAGTCTAAACAAGTGGAAATGTAGATGTGCTTCTTTCGAAGGAAACCAAAGCAACTTACTTGCTAATTGTTCGAAATCATGTGATTGCCATTCAGATTCTGAAGAGGATGCATCCATATGGACATGCATATGTGGTCCCAATGGATTTCCCCAAGTGGCAGAAGATGGTCATAGCGCTATGTGCTTTCATGCTTGCAACTGCACCTGGGGAACTGTCAGCACATCATTAGGTTCAAAGAAACACATTTCAAGCAAGGTTGTTGTAATTGTCCTATTAATATGTGTTATATGCACAACCATTGCGTTGATTACCACAATTGTATGCTACGTCTACCGAAGGAAGCAATACTCTATTCAATCACCAATATTCTCAGTAGATAAGGAAACAAGTAGTGGTAGTACCGCCAACCTAATCAGTCACCGGACAGGAACTTCTTCAGTACCAGAAACAACATTCTTCGTGAATTCTCCTATTTGTCATATCACGGGTTGCTTTAAGAAACCCTCTTTTTTGTTTGGGAGCCAAAAAGAAACTTTTCATGGAAATATAATTCAATTTTCATATGGTGAACTGGAAAGTGCTACTGATAACTTTTCAGCTACCAACCTTATTGGACTAGGCGGAAGTAGTTATGTATACCGTGGTCGCCTGAGAGATGGTAACATTGTGGCAGTTAAGCGATTAAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAATTAATATCTCGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATACTGCTTAGAATCGAAAGGAAAACACATGCAGAGGTTACTAGTATTTGAGTACTTGATTAATGGAAGTTTGAGGGACTGGTTAGACGGAGTTTCTGGAAAATACCTGGATTGGACTACTCGTGTTACGATTGCAATAGGAGCAGCAAGGGGCTTGGAATATCTCCATGAAGCAGCTGCTCCAAGAATTCTTCATAGAGATGTGAAATCAACCAACATTCTTCTGGATGAAAAATGGCAAGCAAAAATAACCGATCTTGGTATGGCGAAAAACTTGAGATCTGATGACCTGCCAAGCGGTTCAGATTCTCCAGCAAGAATGCAAGGAACATTTGGGTATTTTGCACCCGAGTATGCAATTATTGGTAGAGCCTCACTTGAATCAGATGTCTTCAGTTTTGGTGTGGTACTTCTTGAGCTTATCAGTGGTCGACATCCTATTCATAAAACTACCGGCAAAGAAGAAAGTCTTGTTATATGGGCTTCTCCTCGTTTACAGGATAGCAGGCGAGTAATATCGGAGATAGTTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCATATAATGGCATATCTAGCAAAGGAATGCTTGCTACTGGATCCTGACACTCGACCAACTATGAGCGAGGTTGTTCAAATTCTTTCTAGTATTTTACCAGGCAAGTCAAGGAGGAGAAGAAACATTTCCACCAGCTTGTTTCAGGAACCAGAGGATGTAGAAACAAAAAGGCAAGCTCATTCCAGTGAATTTCCAGCTCATAATTCATCACCACTAGATACCGATTACAATCCGAGTCTTGGAAACAAAAATAGAGAAGAAGATGCAGTTTCAGCTGAGTATATGGAAAGTTTGATTCTCTTAGCATCAAAATCTAATAGCTCGCATTCATCAGAAGAGGAAATGGTAGACATAACAGAGCCTCGGTTCGAATCATTTTGCATGACAAATGGCACTGTCACTTGA 1842 0.4034 MKSQIKIALAIIISLLWIQHSFCDEASDTSSLNKWKCRCASFEGNQSNLLANCSKSCDCHSDSEEDASIWTCICGPNGFPQVAEDGHSAMCFHACNCTWGTVSTSLGSKKHISSKVVVIVLLICVICTTIALITTIVCYVYRRKQYSIQSPIFSVDKETSSGSTANLISHRTGTSSVPETTFFVNSPICHITGCFKKPSFLFGSQKETFHGNIIQFSYGELESATDNFSATNLIGLGGSSYVYRGRLRDGNIVAVKRLKDQGGPEADSAFFKEIELISRLHHCHLVPLLGYCLESKGKHMQRLLVFEYLINGSLRDWLDGVSGKYLDWTTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDEKWQAKITDLGMAKNLRSDDLPSGSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRHPIHKTTGKEESLVIWASPRLQDSRRVISEIVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSSILPGKSRRRRNISTSLFQEPEDVETKRQAHSSEFPAHNSSPLDTDYNPSLGNKNREEDAVSAEYMESLILLASKSNSSHSSEEEMVDITEPRFESFCMTNGTVT 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02352 613 FunFam receptor-like serine/threonine-protein kinase NCRK 202 308 - -
Vivi5g02352 613 MobiDBLite consensus disorder prediction 523 562 - -
Vivi5g02352 613 PANTHER OS01G0750732 PROTEIN 29 526 - -
Vivi5g02352 613 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Vivi5g02352 613 MobiDBLite consensus disorder prediction 523 540 - -
Vivi5g02352 613 CDD STKc_IRAK 234 510 - -
Vivi5g02352 613 SMART serkin_6 228 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02352 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Vivi5g02352 613 SUPERFAMILY Protein kinase-like (PK-like) 208 507 IPR011009 -
Vivi5g02352 613 Gene3D Phosphorylase Kinase; domain 1 202 308 - -
Vivi5g02352 613 MobiDBLite consensus disorder prediction 541 558 - -
Vivi5g02352 613 FunFam receptor-like serine/threonine-protein kinase NCRK 309 519 - -
Vivi5g02352 613 Gene3D Transferase(Phosphotransferase) domain 1 309 529 - -
Vivi5g02352 613 Pfam Protein kinase domain 231 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02352 613 ProSiteProfiles Protein kinase domain profile. 228 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02352 Vivi-Chr5 99811745 99816911 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02352 1 609 Receptor kinase-like Gene Family AT2G28250 50.407 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Vivi5g02352 Pkinase 8.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02352 - - gmx:100817870 966.066