Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02339 ATGAGGCCTGAACAATTGCATGTTGCACAACAAATTAGGCGTGACAAATTGAGAATCCAGAATCAAGAGTTTCCTAACAACAACAACAACATAGAACAATTATTATCATTACACCAACAACCACAACAAGGTTTCAACATGGATCTTCATCTTCAACTTCATCATCAACTCAGAAATTCCAACAACAATATGCTTGAAGATGATGATGTTGGTGAAGCTGGTCTTTATTCATCTGATCAGATGATGAACAGTTTTTCGACACCGCCAAATCCGTTACACAGAAACCCCTTGGAGTACTATCATGAGCTAGGTGAACCAAGTAGCAATAACAACAATAACAGGTTGAGTTATTATTATGCAAATGAAACGAATCAGAATGTTTTTTTGCCTTCTGAGCTTAACCATAGTGATATTTTCAAGTCTTCAAGTTCTATTAGTCCTCAAAGTACTTCAGAAGTTGCTTCTTTAATGCATCATGGTGTTTGGGGAGGTGGGAATAGTAGTCATAATGTGTTTCATGAAAATCAAGCTAATTTGTGGACAAATAGAGGTGTTAATATTGTTGACAACAATAACAATAACAACACGGGTTCTTTCTTTAATGATTGTAATAATCCACAAGGTTTATCGTTGTCACTTTCATCAAATTCTTCGCAATCTAAACATTCACCTTCTGCTTCAAATTTTGAACAAGGGTCTTTCTTAAATGTTGTGAAACCAATTCATCAAGCAGAACCAATTGGAGTCTCTCCAAACAGTACTACCACTACTACTACAAGTAGCGGTTTTAGGAACGTTGGTCCTCTTGGACCCTTTACTGGATACGCAACAATACTGAAAAATTCAAGGTTTTTAAAACCTTGTCAACAGTTGTTAGAGGAATGTTGCTGTCAAAATGTTCAAAATACGGCAAAATCATGTGACAATGTTCCAAAATGGGTTTCTCGAGATGTTAATGTTAATGTTGAAGATAATGAAACTGGGAAAGGTAGTAGTAGTTCAGGTGGTTCATGCTCTATGTTTTATGGTTCAAAAGAGAAAGAGAATAGTGCTGCTGTTGTTGCTGATGATGGAGGAGGAGTTGGGAATAATTTTTGTCTTACTTCTTCTAGTTCTCGACCTGAGTGCCAAAAGAATAAGGCTCAACTACTGTTCATGCAAGAAGAGGTTACAAGAAGATACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCATTTGAGTCCGTAGCAGGTCTAAGTTCAGCTACACCATACATTTCAATGGCTCTTAAGTCACTATCAAGACACTTCAAATGCCTCAAAAATGCTATCACAGATCAACTCAAGCATACATGCCAAGCATTGGGAGAGGACTTTTCAGTACTACCAAACACCACATGTAGTAGCACTAAAAGTGACAGTAATAATATGACAAGGCTAAGGTTCATGAATCATAGCTTACAGAAGAACAGTAATATTGACTTTGCTGAACCTCAGCAACATGTTTGGAGACCACAGAGAGGCTTACCTGAACGTTCAGTGGCTATTCTTAAAGCTTGGTTGTTTGAGCATTTTCTTCATCCGTACCCTACAGATACTGATAAACACATGTTGGCTACACAAACAGGTCTATCAAGAAACCAGGTATCCAATTGGTTCATAAATGCTCGAGTTCGTGTATGGAAACCGATGGTTGAAGAAATACACATGCTTGAATCAAAAGGCGCAATAGAAGCTCAGAATCAGAACAATAACAAAAACGAACCCTACAGAGTTGGAACACATGAACGGAAATTCCAGTGTTTGGAAATGGGGTCATCGTCTTCGGGCATTCACAATGTTGAAAAGGTAATTACAAACGAAGAGCAATGGAATAATAACATTCATGAGAAGAGATCTAAAATGGAAAATGAGATTACACCAAACATGGATATGGGTTTTTTGCCTTATCAAAATGGATCTGTGTCACTGACTTTGGGTCTTAGACATGGGGTTGAAAGTGTACAACAACAGCAACAACAGTTGCAGCAGGAGGTAGAGCTTAGACATCAGTATGGAGGACACATGATCCATGATTTTGTGGGTTGA 2073 0.3787 MRPEQLHVAQQIRRDKLRIQNQEFPNNNNNIEQLLSLHQQPQQGFNMDLHLQLHHQLRNSNNNMLEDDDVGEAGLYSSDQMMNSFSTPPNPLHRNPLEYYHELGEPSSNNNNNRLSYYYANETNQNVFLPSELNHSDIFKSSSSISPQSTSEVASLMHHGVWGGGNSSHNVFHENQANLWTNRGVNIVDNNNNNNTGSFFNDCNNPQGLSLSLSSNSSQSKHSPSASNFEQGSFLNVVKPIHQAEPIGVSPNSTTTTTTSSGFRNVGPLGPFTGYATILKNSRFLKPCQQLLEECCCQNVQNTAKSCDNVPKWVSRDVNVNVEDNETGKGSSSSGGSCSMFYGSKEKENSAAVVADDGGGVGNNFCLTSSSSRPECQKNKAQLLFMQEEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISMALKSLSRHFKCLKNAITDQLKHTCQALGEDFSVLPNTTCSSTKSDSNNMTRLRFMNHSLQKNSNIDFAEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGAIEAQNQNNNKNEPYRVGTHERKFQCLEMGSSSSGIHNVEKVITNEEQWNNNIHEKRSKMENEITPNMDMGFLPYQNGSVSLTLGLRHGVESVQQQQQQLQQEVELRHQYGGHMIHDFVG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02339 690 SMART HOX_1 498 562 IPR001356 GO:0003677
Vivi5g02339 690 FunFam BEL1-like homeodomain protein 9 501 563 - -
Vivi5g02339 690 SMART prehox3 273 441 IPR006563 -
Vivi5g02339 690 Gene3D - 501 563 - -
Vivi5g02339 690 Pfam Associated with HOX 278 440 IPR006563 -
Vivi5g02339 690 CDD homeodomain 498 559 IPR001356 GO:0003677
Vivi5g02339 690 ProSiteProfiles 'Homeobox' domain profile. 495 558 IPR001356 GO:0003677
Vivi5g02339 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 159 580 - -
Vivi5g02339 690 Pfam Homeobox KN domain 515 554 IPR008422 GO:0003677|GO:0006355
Vivi5g02339 690 SUPERFAMILY Homeodomain-like 500 564 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02339 Vivi-Chr5 99491513 99499186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02339 252 568 Homeobox Transcription Factor Family AT5G02030 45.538 1.95e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi5g02339 POX 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02339 - - vvo:131601876 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g07200 2 215209413 215211923 Vivi5g02339 5 99491513 99499186 PCT