Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02278 ATGGGATTCTCCAAAACCTCTCTATCTCTTTTCTTGTTCTTCATTTTACTTTCTTCATCTTATGCAACTTCTCGCATCACACGTCAACAACGATTTCCAACAAGAAAATTTTCATCAAATGGACTAGCTGAACAACTTATAAGAAGCTTGAACTTATTCCCAAAGCATTCAGCCAATATACATGGTGAATACTCTATCGATGATTTCTTCCCAGGAAAAATCGTAGAGAAGTCGTTTTCGTTTCTCGCTAGTTCTAATGGAACTTCAGTTGAAGATCTCGGTCACCATGCTGGATTCTATACGCTTCCTCATTCCCAAAATGCAACGATGTTCTATTTTTTCTTTGAATCAAGAAATGGTGCTAAGGATGCACCAGTTGTGTTATGGTTGACCGGAGGTCCAGGTTGTGCCAGTGAATTAGCTTTGTTTTATGAGAATGGTCCTTTCAAAATTAACAATGATCTGTCTCTTTCATGGAATGACTTTGGTTGGGACAAGGGATCAAATATTATTTTTGTTGATCAACCCATTGGGACAGGTTTTAGCTACGCTCCTGATTCAAGTTATATTCCTGATGATGAATATAGTGTTACCGAGGATATGTACGATTTCTTAGGGGCATTTTTCAGGGAACACCCTGAAATGGTTAAGAATGAATTTTATATTGCTGGAGAATCATATGCTGGACAGTATATTCCACCTCTTGCATCTCGAGTTCAAAAAGGAAACAAAGACATAAACTTAAAGGGTTTTGCTATTGGTAATGGAATGACCAAACCAGAAACTCAATACCCAGCATACACTCAGTTTGCAGTTGATAACAAGTTGATCACAAAGGAAGATCAAGCGAATATCAGCAACAAGTTGGTTCCACCATGTTTGGAGGCCATCGATACTTGTGGGGTTGATGGTCAAGAAGCTTGCGAAACAGCTTTAAAACAATGTCAAAAAATATTTACGAGTATATTGGACATTGCAGGCAACATTAATTACTATGACATCAGAAAGAAATGTGAAGGAAAATTGTGTTATGATTTCTCAAATTTGGAGAAATTTCTAAATAATACTGCAGTTAGGAAAGCATTAGGTGTTGGGAACATAGAGTTTGTTTCATGCAGCAGTGAAGTGCATGATGCTTTGGTTCAAGATTTGATGTTTAACTATGACCAATATATTCCACCACTTCTTGAGAATGGAATCAAAGTTCTTATATATGCTGGAGAATTCGATTTTATTTATAATTGGCTTGGGAATTCTCAATGGGTTCATGCCATGAAGTGGTCAGGTAAAGAACAATTTGTGGCCTCCAAAACAGTTCCTTTTTTGGTTGATGGTAAAAATGCGGGATCGTTGAATAATTATGGACTTCTCTCTTTTCTAAAGGTGAATGGTGCTGGACATATGGTTGCTATGGATCAACCAAAAGCTGCACTTCAGATGCTCAAAGAATGGTTAGCAAAGGATCACACTCTCACA 1476 0.3747 MGFSKTSLSLFLFFILLSSSYATSRITRQQRFPTRKFSSNGLAEQLIRSLNLFPKHSANIHGEYSIDDFFPGKIVEKSFSFLASSNGTSVEDLGHHAGFYTLPHSQNATMFYFFFESRNGAKDAPVVLWLTGGPGCASELALFYENGPFKINNDLSLSWNDFGWDKGSNIIFVDQPIGTGFSYAPDSSYIPDDEYSVTEDMYDFLGAFFREHPEMVKNEFYIAGESYAGQYIPPLASRVQKGNKDINLKGFAIGNGMTKPETQYPAYTQFAVDNKLITKEDQANISNKLVPPCLEAIDTCGVDGQEACETALKQCQKIFTSILDIAGNINYYDIRKKCEGKLCYDFSNLEKFLNNTAVRKALGVGNIEFVSCSSEVHDALVQDLMFNYDQYIPPLLENGIKVLIYAGEFDFIYNWLGNSQWVHAMKWSGKEQFVASKTVPFLVDGKNAGSLNNYGLLSFLKVNGAGHMVAMDQPKAALQMLKEWLAKDHTLT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02278 492 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Vivi5g02278 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 172 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 457 470 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 183 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 95 474 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 SUPERFAMILY alpha/beta-Hydrolases 94 486 IPR029058 -
Vivi5g02278 492 Pfam Serine carboxypeptidase 92 486 IPR001563 GO:0004185|GO:0006508
Vivi5g02278 492 Gene3D alpha/beta hydrolase 75 491 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02278 Vivi-Chr5 95795453 95803665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02278 352 486 Calmodulin-binding Proteins AT2G22960 22.695 7.38e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02278 K16298 - zju:107409144 597.045