Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02264 ATGAGATTCTCCAACCGCAGGTTGCTCCTACAGTACGAGGATGTTCCAATCTCAACACCTCCTCAAATCCAACCCACCAACACCAAAACCGCATCCTCACCTTCCATTCCCACCATTCCATCAAAAACCATCACAAGCCCTTTGAGTCTACCACTACCCTTACATCCGATTTTCTCTTCCAACGTGGCCTACTCCTTCCTCCTCATCTTCTCCATCTTCTTCTTCGCGGCCTTCGTCATCTTATCCATCCGTGAAGTCTCGTCCCGGCGGCGGCGCGGCATCCCTCCGCGACGGGGGCTGGATCCCGCCGCCGTGAAGGCTCTGCCGGTTTGTTTGTACGAGGAGGATACGAAGCAGCCGGACTGTGCGATTTGTTTGGAGGAGTTTCGAGAGTGTGAGGAAGTGAAGATGGTTCCGTACTGTTCGCACGTGTTTCATCCGGAATGTATTGACGCGTGGCTTTCTGCGCACGTGACTTGTCCTATTTGCAGGTGCGTTATTAAAGTGTGCGGTGGGAGTGTCGATCAAAATGCTGGAAGATCAACGGTGGATAATGGAAGTTGA 564 0.5248 MRFSNRRLLLQYEDVPISTPPQIQPTNTKTASSPSIPTIPSKTITSPLSLPLPLHPIFSSNVAYSFLLIFSIFFFAAFVILSIREVSSRRRRGIPPRRGLDPAAVKALPVCLYEEDTKQPDCAICLEEFRECEEVKMVPYCSHVFHPECIDAWLSAHVTCPICRCVIKVCGGSVDQNAGRSTVDNGS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02264 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 169 IPR013083 -
Vivi5g02264 187 Pfam Ring finger domain 121 164 IPR001841 -
Vivi5g02264 187 SUPERFAMILY RING/U-box 108 169 - -
Vivi5g02264 187 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vivi5g02264 187 MobiDBLite consensus disorder prediction 18 37 - -
Vivi5g02264 187 FunFam E3 ubiquitin-protein ligase ATL6 85 169 - -
Vivi5g02264 187 SMART ring_2 122 163 IPR001841 -
Vivi5g02264 187 PANTHER RING FINGER DOMAIN-CONTAINING 50 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02264 Vivi-Chr5 95311997 95313071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02264 97 164 C3H Transcription Factor Family AT2G27940 57.143 3.88e-24 93.2