Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02259 ATGTCGGTAACGCCACCATGGCTAGAACCATTACTATCAACCACATTCTTCTCTCCCTGCAAAACTCACATCAACGCGCCGAGAAACGAATGCAACATGTATTGTCTCGATTGTAAAGAATCATTCTGTTTTTACTGCAAACAATCCTGGCACAACGACCATCAACTAATTCAAATACGGAGATCGTCTTATCATGATGTTGTGAGGGTGACGGAGATTCAGAAGGTATTGGATATAACTGGAGTTCAAACGTATGTGATTAACAGTGCTAGAGTGATTTTTCTTAATGAGAGGCCACAGAATCAGATTAAGAATACTAATGCTGTTATTAGTGGAAGTAAGAGTAATTCACATTTGTGTGAAATTTGTGCAAGATATTTATTGGACCCTTTTCGTTTCTGTTCTTTGGGTTGCAAGCTTGTAGGAATAAAGAAAAATGGGAATGCAAGCTTTATCTTAAGCACAAAGAAAGAGGAAGAAATGGGTAAAATGCAGGAAAGAAAGTTGCTATCAAAGGAAGAAGACGAAGAAATATTAATAATGCGTGAAGGAATCCACAAACAACAAGTATACAAAAGCACGTCTTCTCCTTATTCATCTCAACAAGCTTGTTCAAATTCAAGGAGAAGAAAGGGAATACCTCATAGAGCACCTTTAGGACCCTAA 666 0.3784 MSVTPPWLEPLLSTTFFSPCKTHINAPRNECNMYCLDCKESFCFYCKQSWHNDHQLIQIRRSSYHDVVRVTEIQKVLDITGVQTYVINSARVIFLNERPQNQIKNTNAVISGSKSNSHLCEICARYLLDPFRFCSLGCKLVGIKKNGNASFILSTKKEEEMGKMQERKLLSKEEDEEILIMREGIHKQQVYKSTSSPYSSQQACSNSRRRKGIPHRAPLGP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02259 221 Pfam PLATZ transcription factor 60 140 IPR006734 -
Vivi5g02259 221 ProSiteProfiles Zinc finger B-box type profile. 20 59 IPR000315 GO:0008270
Vivi5g02259 221 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 4 219 - -
Vivi5g02259 221 SUPERFAMILY B-box zinc-binding domain 19 61 - -
Vivi5g02259 221 MobiDBLite consensus disorder prediction 190 208 - -
Vivi5g02259 221 MobiDBLite consensus disorder prediction 190 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02259 Vivi-Chr5 95094409 95096260 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vivi5g02259 PLATZ 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02259 - - gmx:100787414 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02259 5 95094409 95096260 Vivi5g02259 5 95094409 95096260 ECH