Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02244 ATGAGATTGGAGAAATGCTGGTTCTGTTCTTCTACTGTATATCCTGGACATGGAATCCAGTTTGTTCGCAATGATGCAAAGATTTTTCGATTTTGTAGATCTAAGTGCCACAAGAACTTTAAAATGAAGAGGAACCCTCGTAAGGTGAAATGGACCAAGGCATATAGGCGAGTGCATGGAAAGGATATGACACAGGATTCAACCTTTGAGTTTGAGAGGAAGCGTAACAGGCCTGAGAGATACGACAGGAATCTTGCTCAGACTGTCCTCGGTATCATGCCAAAGATTGAAAAGATCAGAGTCGACAGGGAAGCGAGACACCACATGAATAGGATGAAGGGCAAGAAGCTGAAGATTCAGAAGGAGGGCGTTAAGGAGTTGCTACAGAGCATCCATATGCTTCCTATTCCTAAGGTCAAAGTGGTGGAACCGCCTAAGATCAAAGTGGCTGTTTCCCAACAACAATCAGAGCAAAATCTTGCGATGGAAGAGTGA 495 0.4404 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHGKDMTQDSTFEFERKRNRPERYDRNLAQTVLGIMPKIEKIRVDREARHHMNRMKGKKLKIQKEGVKELLQSIHMLPIPKVKVVEPPKIKVAVSQQQSEQNLAMEE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02244 164 ProSitePatterns Ribosomal protein L24e signature. 8 25 IPR023442 -
Vivi5g02244 164 CDD Ribosomal_L24e_L24 1 54 IPR000988 -
Vivi5g02244 164 SMART 4TRASH 6 44 IPR011017 -
Vivi5g02244 164 FunFam probable ribosome biogenesis protein RLP24 1 67 - -
Vivi5g02244 164 Gene3D Ribosomal protein L24e 1 68 IPR038630 -
Vivi5g02244 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 56 - -
Vivi5g02244 164 Pfam Ribosomal protein L24e 1 65 IPR000988 -
Vivi5g02244 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 159 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02244 Vivi-Chr5 93465212 93467250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02244 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G44860 68.902 5.86e-80 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02244 K02896 - gmx:100306000 272.322