Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02203 ATGGCGGAAGAACATCGATGCCAAGCTCCACGTCTCTGCGCTAACAACTGCGGTTTCTTCGGGAGTCCCGCCATGCAGGATCTCTGTTCTAAATGTTACCGTGATTTGCAGCTCAAGGAACAGCGATCTTCGTCGGCGAAACTGGTTCTCAATCAAACCCTGATTTCTCCTCCTCAAGCGGTGGTTTCTCAGGAGGTTCTTGTTGTTCAGCCTTCTTCTCCGGAGGCGGTGGTTGAGTCTTTACCGGCGGCGGCGGTGGTGGAGACTGTTGTTGGAACATCGGTGCAGGCGAATCCGAACCGGTGCGGGAACTGTAGGCGGCGCGTGGGGCTGACGGGATTTAAGTGCAGGTGCGGATTGACGCTGTGTGGGTCCCACAGGTATCCGGAGCAACACGAGTGTGGGTTCGATTTTAAGGGGATGGGGAGAGAGCAGATCAAGAAGGCGAATCCGGTGGTGAAGGGAGAGAAATTGAACAAGATCTGA 486 0.5494 MAEEHRCQAPRLCANNCGFFGSPAMQDLCSKCYRDLQLKEQRSSSAKLVLNQTLISPPQAVVSQEVLVVQPSSPEAVVESLPAAAVVETVVGTSVQANPNRCGNCRRRVGLTGFKCRCGLTLCGSHRYPEQHECGFDFKGMGREQIKKANPVVKGEKLNKI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02203 161 Gene3D - 79 157 IPR035896 -
Vivi5g02203 161 Pfam AN1-like Zinc finger 102 138 IPR000058 GO:0008270
Vivi5g02203 161 Gene3D - 1 56 - -
Vivi5g02203 161 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vivi5g02203 161 FunFam Zinc finger AN1-type containing 6 78 157 - -
Vivi5g02203 161 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 161 - -
Vivi5g02203 161 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270
Vivi5g02203 161 SUPERFAMILY AN1-like Zinc finger 94 156 IPR035896 -
Vivi5g02203 161 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Vivi5g02203 161 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vivi5g02203 161 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270
Vivi5g02203 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02203 Vivi-Chr5 91148113 91149256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02203 1 161 C2H2 Transcription Factor Family AT3G52800 49.419 3.58e-43 139