LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g02185	ATGGTGCATCCGGACAACATTGTGCAAGACGATGGAGTATTAAATCCGGAAATTGTCAACGTTAATAACGATCCGGTTATTGACGCTACTCCTATGATCAATGCGGTCGATGTTAGGCAACATTTTACAAATGATCGGAGCTTCGTTAGTCGAGAACAATTGATTGATTGGGTTCGAAACGAAGCTAGTAAACTTGGATTTGGAATTGTCATTTTAAGGTCGGACAACGGAAATAGTAGGCGGAAAGCTTTCGTTGTTTTGAATTGCGAACGTGGTGGTAGTTATGTGCAATCAAACCGTGTGCTAAAACACGAGGACACGGGATCGAGAAAGTGCGGGTGTCCTTTTAAGTTGCGTGCTAATCGGAGGGTTGATGATTTGTGGCGGTTAACCGTAATTTGTGGAATGCATAATCATGCCTTGGATGTCAAGTTACACGGGCATCCAATGGCGTGTCGTTTGTCCCGCGAAGAGAGGAATGTGATATCGGACCTAACGATAGTCAAAGTGGCGCCTCGCAACATACTTGCCGATTTGAAGCGTAAGAAACCGGATAGCGTTTCAAATATCAAGCAAGTTTACAATGAACGGCACAATCTCAAGGAATCAAACCAAGAACAATACATTGTTAAGTCACAAAAAAAGTAA	648	0.429	MVHPDNIVQDDGVLNPEIVNVNNDPVIDATPMINAVDVRQHFTNDRSFVSREQLIDWVRNEASKLGFGIVILRSDNGNSRRKAFVVLNCERGGSYVQSNRVLKHEDTGSRKCGCPFKLRANRRVDDLWRLTVICGMHNHALDVKLHGHPMACRLSREERNVISDLTIVKVAPRNILADLKRKKPDSVSNIKQVYNERHNLKESNQEQYIVKSQKK	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g02185	215	Pfam	FAR1 DNA-binding domain	62	141	IPR004330	-
	Vivi5g02185	215	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	84	212	IPR010061	GO:0004491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g02185	Vivi-Chr5	90547396	90552384	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Vivi5g02185		FAR1	6e-07	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g02185	-		-	vvo:131620442	394.815