Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02178 ATGGCTAGTCATAGAATTAGAGAGATTGGTTTATCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGTGTTCTTCATGGAATCACTAGCTCATCATCAACTTTAATGAATCAAGGATCTGCTTTTGATTTTGGAGAGCTTGAAGAGGCAATAGTTCTTCAAGGAATCAAGATAAGAAATGATGAGGGAAACAAACCAGCAGCTACACTTGAAATGTTTCCTTCCTGGCCAATTAGGTTCCAACAAACACCAAGAGTTGTTGCTTCTCTCACTTCTCCATCTTTGACCAATCCATATGGAGGTTCAAAATCAGGAGGTGAAAGTAGTGATTCAGGATCAACAGAGATTCAATTTGAAACAGATTCACCATTAAGTATAAAGGCATCTTCTTCTTCAGATCATCATCATAATCATGGTTTTGATCAGATTCAACAGATAGCAACAACTGATGAAGCTGCTTTAAGAACAGGCACATCACAGAATCAGTCAAAAGCCAAATCACCTCAACAAAAGAAAAAAGGAGCTGTTTCCACATCAGAAAAAACACTTGATCCAAAGACACTGAGAAGATTGGCACAAAATAGAGAAGCTGCAAAGAAAAGTCGATTAAGAAAAAAGGCTTATGTGCAGCAGCTTGAGTCAAGTCGATTAAGATTATCGAATCTCGAACAAGATCTTCAAAGAGCGCGATCGCAGGGACTATTTTTAGGCTGTGGTGGTGGAAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTAGAGGAAGATCAACGGCAGTTGACCGAGCTTCGTGGCGGGCTGCATGCAGCATTGGCTGATAATGAACTGAGAGCGATTGTTGATGGATATCTGTATCATTACGACGAGCTTTTCCGATTAAAGGAAGTCGCTGTTAAATCGGATGTTTTTCACCTTATTAAAGGTATTTGGACTTCTCCGGCCGAGCGACCGTTCATTTGGATAGGCGGTTTCAAGCCCTCCGAGCTCATCACGATGTTGACACAACAATTGGAGCCTCTAGCTGAGCAACAAATAGTAGGGATAATGGAGCTAAGGCAATCATCACATCAAGCAGAAGAAGCTCTCTCTCAAGGCCATGAACAGCTCCACCATTGTATCGTCGACACCATTGCCGGAGGGCCGGTCATCGACGGTGTTCAACAGATGGTCGCCGCCATGGCCAGAATCTCCAACCTTGAAGGATTTGTCCACCAGGCTGATAATTTGAGACAACAAACACTTCATCAACTATGTCGAATATTGACCGTTCGTCAAGCAGCAAGATGTTTTATTGTAATTGGAGAATATTATGGACGTCTTCGGGCTCTTAGTTCTCTTTGGGCTTCGAGACCACGAGAGAACTTGATGAATGATGATAATTCATGCCAAGCAACAACGGAATTGCAAATGGTTCAACCTTCACAAAGTCATTTCTCGAGTTTCTGA 1464 0.4242 MASHRIREIGLSESGPSSQHVPYGVLHGITSSSSTLMNQGSAFDFGELEEAIVLQGIKIRNDEGNKPAATLEMFPSWPIRFQQTPRVVASLTSPSLTNPYGGSKSGGESSDSGSTEIQFETDSPLSIKASSSSDHHHNHGFDQIQQIATTDEAALRTGTSQNQSKAKSPQQKKKGAVSTSEKTLDPKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRQLTELRGGLHAALADNELRAIVDGYLYHYDELFRLKEVAVKSDVFHLIKGIWTSPAERPFIWIGGFKPSELITMLTQQLEPLAEQQIVGIMELRQSSHQAEEALSQGHEQLHHCIVDTIAGGPVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQAARCFIVIGEYYGRLRALSSLWASRPRENLMNDDNSCQATTELQMVQPSQSHFSSF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02178 487 MobiDBLite consensus disorder prediction 155 177 - -
Vivi5g02178 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Vivi5g02178 487 SMART brlzneu 183 245 IPR004827 GO:0003700|GO:0006355
Vivi5g02178 487 PANTHER TRANSCRIPTION FACTOR TGA9 132 459 - -
Vivi5g02178 487 Pfam Seed dormancy control 265 340 IPR025422 GO:0006351|GO:0043565
Vivi5g02178 487 MobiDBLite consensus disorder prediction 155 190 - -
Vivi5g02178 487 Coils Coil 206 233 - -
Vivi5g02178 487 Gene3D - 186 235 - -
Vivi5g02178 487 MobiDBLite consensus disorder prediction 92 131 - -
Vivi5g02178 487 Pfam bZIP transcription factor 187 228 IPR004827 GO:0003700|GO:0006355
Vivi5g02178 487 SUPERFAMILY Leucine zipper domain 187 229 IPR046347 GO:0003700|GO:0006355
Vivi5g02178 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Vivi5g02178 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Vivi5g02178 487 MobiDBLite consensus disorder prediction 92 138 - -
Vivi5g02178 487 FunFam BZIP family transcription factor 186 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02178 Vivi-Chr5 90384521 90388155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02178 136 487 bZIP Transcription Factor Family AT1G08320 64.789 4.61e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vivi5g02178 DOG1 6.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02178 K14431 - gmx:100101904 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g06357 2 198885683 198890405 Vivi5g02178 5 90384521 90388155 PCT