Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02172 ATGGCAGAGGCGGAGGAGCTTCCCAAAACCATCGTACGCCGTGTGGTGAAGGAAAAGCTATCCACTTGCTCCGACGACGGAGACATTGCCGTTCACAAAGACGCTCTTCTCGCATTCTCCGAAAGTGCCAAAATATTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAAGGAGTCAAAGAGGCAAATTATCAACGCTGAAGATGTTTTCAAAGCTCTTGAAGAAACTGAGTTTACTGAATTTGTTAACCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCGACCGTGTCAAAGGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGTTGGAAGGTGAGCCGTCTGATAAAGGTGAGCCATCTGAAAAAGGCGATCAAGGAGAGCCATCTGAGAAAGGCGATCAAGGAGAGCCATCTGATAAAGGAGATCAAGGTGAGCCATCCGAGAAAGGCGAACAAGGTGATGATGATGACCTATGGCATTAG 513 0.4561 MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESAKIFIHYLSATANDICKESKRQIINAEDVFKALEETEFTEFVNPLKDSLEEFRKKNAGKKATVSKGKGDEKGKKRKLEGEPSDKGEPSEKGDQGEPSEKGDQGEPSDKGDQGEPSEKGEQGDDDDLWH 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02172 170 FunFam DNA polymerase epsilon subunit 3 1 143 - -
Vivi5g02172 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Vivi5g02172 170 MobiDBLite consensus disorder prediction 94 170 - -
Vivi5g02172 170 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 142 - -
Vivi5g02172 170 SUPERFAMILY Histone-fold 7 119 IPR009072 GO:0046982
Vivi5g02172 170 Gene3D Histone, subunit A 1 166 IPR009072 GO:0046982
Vivi5g02172 170 Coils Coil 58 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02172 7 140 CCAAT-HAP3 Transcription Factor Family AT3G53340 32.090 4.19e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi5g02172 CBFD_NFYB_HMF 5.3e-09 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02172 5 90027955 90030011 Vivi5g02172 5 90027955 90030011 ECH