Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02170 ATGCCAACGGAAAAGCCAAGTTCTTCAGCGGTTATTGGTAAGCAATCTGAGCCTGAAAAGCCGGTTGAATCTGATGAGAAGGTCAACCTTGAAGAAGAACCTGAGGAAGAAATGGAAGAAGAGATTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTAGAAGAAGAAGAGGAGGACCCAGAGATGGTAGAGGAAGAGGAAGAAGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAAGACACTGTGCCCAACCAGGACATTGACGATGATGAGAAGAAGAAACATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACATAGGTGGCATTCCTCTTGATGCCTTAATGGAGGATTTGAAAGATTTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATTCTTCGGAGAATAAGGGTTTCGCTTTTGTGCTTTTTAAAAATGAAGAACTGGCTTCTAGAGCCATTGAGGAGCTGAATAATACTGAATTTAAGGGTAAAAAAATAAGATGTTCTACATCTCAAGCAAAAAATCGTCTATTTATCGGTAATATTCCTAGAAGCTGGGGCGATAAAGAGCTAAAGAAGGTTGTGAGTGAGATTGGACCTGGTGTTACCGCTGTTGAACTAGTCAAGGATATGAAGAACATTATCAATAACCGCGGTTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAATATTCAAAGCAAAAGATGATGAACCCAACATTTAAGCTTGGTGACAACTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTTCATCTCAGGTGAAGGCAGTATATGTGAAGAACCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGAAAGATCACAAAGGTGGTTCTTCCACCACCAAAGTCTGGTCAGGAAAAGAACAGAATTGGCTTTGTTCATTTTGCAGAGCGATCAAATGCTATGAAAGCACTAAAGAATACTGAAAGATATGAATTAGAAGGTCGAAGTTTAGAGTGTTCTCTAGCAAAGCCACAGGCTGACCAGAAGGCTGTTGTATCAAATATACAGAATCAAGGACTGCTTCCTAATTATCCGCCACATCTTGGTTATGGTTTGATTGGTAATCCGTATGGTGCACTTGGTGCTGGATATGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCGGGTCAAACTCCCGCTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATTGGATATGTCTTGCAACAGCCAGGATTGCAGCCAGGAATGCCCCCGCAAACCCCACCTTCACATCAAAGAGGTGGCAGGAGTAGTGGTGGTGGCGGCAGTAGTGGTGGGAGTGGCAGCAGGAATACAGGCAGTTCAAGTAAGGGAAGGCACAGCAATGATAATGGTCATGGGCGAAGATACCACCCTTATTAA 1512 0.4345 MPTEKPSSSAVIGKQSEPEKPVESDEKVNLEEEPEEEMEEEIEYEEVEEEEEVEEIEEEVEEEEEDPEMVEEEEEEEEEEEEEEEEVEEDTVPNQDIDDDEKKKHAELLSLPPHKSEVYIGGIPLDALMEDLKDFCERIGEVVQVRIMKGKDSSENKGFAFVLFKNEELASRAIEELNNTEFKGKKIRCSTSQAKNRLFIGNIPRSWGDKELKKVVSEIGPGVTAVELVKDMKNIINNRGFAFIDYYNNACAEYSKQKMMNPTFKLGDNSPTVSWADPKNADSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGRSLECSLAKPQADQKAVVSNIQNQGLLPNYPPHLGYGLIGNPYGALGAGYGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQPGLQPGMPPQTPPSHQRGGRSSGGGGSSGGSGSRNTGSSSKGRHSNDNGHGRRYHPY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02170 503 SMART rrm1_1 117 190 IPR000504 GO:0003723
Vivi5g02170 503 SMART rrm1_1 197 274 IPR000504 GO:0003723
Vivi5g02170 503 SMART rrm1_1 291 364 IPR000504 GO:0003723
Vivi5g02170 503 SUPERFAMILY RNA-binding domain, RBD 116 370 IPR035979 GO:0003676
Vivi5g02170 503 SMART rrm2_1 291 364 IPR003954 GO:0003676
Vivi5g02170 503 SMART rrm2_1 117 190 IPR003954 GO:0003676
Vivi5g02170 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Vivi5g02170 503 CDD RRM_SF 118 190 - -
Vivi5g02170 503 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 490 - -
Vivi5g02170 503 MobiDBLite consensus disorder prediction 28 95 - -
Vivi5g02170 503 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Vivi5g02170 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Vivi5g02170 503 MobiDBLite consensus disorder prediction 1 100 - -
Vivi5g02170 503 MobiDBLite consensus disorder prediction 445 503 - -
Vivi5g02170 503 Coils Coil 30 91 - -
Vivi5g02170 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Vivi5g02170 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Vivi5g02170 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Vivi5g02170 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 261 IPR000504 GO:0003723
Vivi5g02170 503 Gene3D - 30 196 IPR012677 -
Vivi5g02170 503 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
Vivi5g02170 503 Gene3D - 278 383 IPR012677 -
Vivi5g02170 503 Gene3D - 197 277 IPR012677 -
Vivi5g02170 503 SUPERFAMILY RNA-binding domain, RBD 197 281 IPR035979 GO:0003676
Vivi5g02170 503 MobiDBLite consensus disorder prediction 460 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02170 Vivi-Chr5 89996921 90003725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02170 132 455 Eukaryotic Initiation Factors Gene Family AT4G34110 26.027 5.74e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02170 K13161 - gmx:100785076 622.468