Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02149 ATGGTAGATATCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGCTTTTACCTAAAGAACAAGCTTCAAGGAGAAAGAAATGCTTTTGATAGGGTTATTCCTGTCATTGACATCAATGGTGTAGAACCATGGAATCTCCCACCTCTTGCGGGGGAGCTATGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAGAGAGAAGCAAGAGGAGGGAGGCCTAATAGAACAACTGGATGTGGTTATTGGAAGGCAACAGGTTCTCCTGGTTATGTTTATTCTTCTGATAATAAAGTGATTGGAGTGAAGAAAACAATGGTGTTCTATAGAGGAAAAGCTCCTAGTGGAAGGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCAATTGTGTAACCAATCCAATACTGCCACACCTCAGTTAAGGCGAGAATTCAGTTTGTGTCGAATATACGTGATATCAGGAAGTTTTAGATCATTTGACCGGCGTCCATTAGAGAATGAAAGAAATGACCGATTTCGAGTTAACCAGATCGATCAAAATTCATTTGTCGTAACGTGTACTAATCAAAATGCAAGAATGGATCATGCATCAAGTTCATTTGAAATTTCTCAATTAGGAGGATTCCAAAGTGTTTATGATCTTCCAGAGGTTGGAGGGGGTTCAAATAGCAGTAATTGGAATGTAAATAACAATGGTGATAATGGTGATGAGGCTCAACTCCAAGAACCATTATGGGAATGGGAATGTGAACATTTTAGTTGGACTTAA 795 0.3975 MVDIPPGFRFFPTEEELVSFYLKNKLQGERNAFDRVIPVIDINGVEPWNLPPLAGELCREDKEQWFFFSPGQEREARGGRPNRTTGCGYWKATGSPGYVYSSDNKVIGVKKTMVFYRGKAPSGRKTKWKMNEYRAIQLCNQSNTATPQLRREFSLCRIYVISGSFRSFDRRPLENERNDRFRVNQIDQNSFVVTCTNQNARMDHASSSFEISQLGGFQSVYDLPEVGGGSNSSNWNVNNNGDNGDEAQLQEPLWEWECEHFSWT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02149 264 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Vivi5g02149 264 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Vivi5g02149 264 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Vivi5g02149 264 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Vivi5g02149 264 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02149 Vivi-Chr5 89482412 89484021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02149 3 257 NAC Transcription Factor Family AT5G22380 52.896 8.34e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi5g02149 NAM 3.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02149 - - cam:101497878 399.823