Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02123 ATGTCCGGCACCCGAGCTCCTCCCGCCGCCGCATCTCCCTCCAGTCCACCCGACCAGATCATGAAACGGCAACCGCCGTTTTCATCCTTGAAACCTCCTTTTGTAGCTTCCGGAGATTACCACCGGTTCAACCCTGACCACCGGAGAAATCTCGACCAGGAAACTGAAGCTATCGTCGTTAAGACTCCTCAATTGAAGCGGAAAAGTGAAGCAGCTGGTTTTGAAGCTGATTCAGGTGTTAGGATGACTCCTGGATCCACTGAACCAGCCAATAGTCCTTCTCAGACGCCTGTATCTGGAAAGATGGGGAAGGGAGGCAAATCCTCTAGGATGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCCCAAATATTGGTTCTCCTTCGGGAAATAATCTCACTCCTGCTGGTCCATGTCGATATGACAGCTCTTTAGGTCTGTTAACAAAAAAATTCATCAATTTAATCAAACAAGCAGAGGATGGTATTCTTGATCTAAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGCCTGGATGTTTCAAAACCAGGGGAAGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAATTGAAAATTTAACGATGGAGGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGGATCTTAGCGAAGATGAAAATAATGAGAAGTTGCTTTTTGTTACTGAGGAGGATATAAAGAACTTGCCCTGCTTCCAGAATGAAACCTTGATAGCAATTAAAGCTCCACATGGAACCACTTTGGAAGTCCCTGATCCTGATGAGGCCGCTGATTATCCGCAGAGGAGATACAGGATAGTCCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGCCAATTTGAAGAGAAGTTTGAGGAGATTAACGGTGTTGAGGTTGCACCCAAAATTCCATCTAATCCAGAAGTTAGCCAGCATCCGTCACCTGTAGTCCCAGAAGACAAAGACAAAGGGAAGGAAATAGAAGTGCAGAGACAAGACGGTGAAGGGCCTAGTTCAGATCTTACCAACAATCACGACTTCGTTAGTGGGATCATGAAGATTGTCCCTTCAGATGTTGCGAGTGATGCCGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACCGACATGTGGAGAACAGAACCCGGAGTTGAATGGAATGAACTCAACGCACTTCAAGAAGATTATTGTATGGCTCGAGTGGACAATACAACCCCAAATCATCCTCCGAACACAGGTGACGAGTCTTCTGCAGCCAACCCTACTGTAGGTTGA 1389 0.4521 MSGTRAPPAAASPSSPPDQIMKRQPPFSSLKPPFVASGDYHRFNPDHRRNLDQETEAIVVKTPQLKRKSEAAGFEADSGVRMTPGSTEPANSPSQTPVSGKMGKGGKSSRMTKCNRSGTQTPGPNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEQIREMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVAPKIPSNPEVSQHPSPVVPEDKDKGKEIEVQRQDGEGPSSDLTNNHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELNALQEDYCMARVDNTTPNHPPNTGDESSAANPTVG 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02123 462 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Vivi5g02123 462 CDD E2F_DD 217 323 IPR032198 GO:0046983
Vivi5g02123 462 FunFam E2F transcription factor 1 135 208 - -
Vivi5g02123 462 Gene3D - 135 208 IPR036388 -
Vivi5g02123 462 Gene3D - 213 323 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 84 102 - -
Vivi5g02123 462 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Vivi5g02123 462 MobiDBLite consensus disorder prediction 41 55 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 110 137 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 439 462 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 1 137 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 442 462 - -
Vivi5g02123 462 MobiDBLite consensus disorder prediction 339 362 - -
Vivi5g02123 462 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Vivi5g02123 462 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Vivi5g02123 462 Coils Coil 219 260 - -
Vivi5g02123 462 PANTHER TRANSCRIPTION FACTOR E2F 82 422 IPR015633 GO:0000978|GO:0006357
Vivi5g02123 462 Coils Coil 157 177 - -
Vivi5g02123 462 SUPERFAMILY E2F-DP heterodimerization region 220 323 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02123 Vivi-Chr5 87309805 87315978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02123 22 435 E2F-DP Transcription Factor Family AT5G22220 58.824 4.74e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vivi5g02123 E2F_CC-MB 3.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02123 K06620 - gmx:100819817 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02123 5 87309805 87315978 Vivi5g02123 5 87309805 87315978 ECH