Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02104 ATGTTTGGGAGAGCACCGAAGAAAAGTGATAGTACGAGGTACTATGAAATCCTGGGTGTTTCTAAGAACGCTTCTCAGGATGATTTGAAAAAAGCTTACAAGAAAGCTGCCATTAAGAATCATCCTGATAAAGGTGGTGATCCCGAGAAGTTCAAGGAGCTAGCACAAGCTTATGATGTTCTGAGTGATCCTGAGAAGCGTGAGATATATGATACATACGGTGAAGATGCTCTTAAGGAAGGAATGGGAGGTGGTGGCGGCGGCGGCCATGATCCATTTGACATCTTCTCGTCTTTCTTTGGTGGTGGTGGCGGTGGTAGTAGCCGAGGACGGAGGCAGAGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTCTGGAGGATCTTTATCTTGGAACATCTAAGAAGCTTTCTCTCTCGAGGAATGTCTTGTGCTCAAAGTGCAGTGGCAAAGGTTCTAAATCCGGGGCTTCCCTGAAATGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCAATTAGGCAACTCGGTCCATCAATGATTCAGCAAATGCAGCATCCCTGCAATGAATGTAAGGGTACTGGTGAGACTATCAATGACAAAGATCGCTGCCCACAGTGTAAGGGAGAGAAGGTTGTACAAGAAAAGAAAGTACTTGAAGTTCATGTGGAGAAAGGAATGCAGAACAGCCAGAAGATTACATTCCCTGGGGAAGCTGATGAAGCACCAGACACAGTTACTGGGGATATTGTATTTGTGCTTCAGCAGAAAGAACATCCCAAGTTCAAAAGAAAGAATGAAGACCTTTTTGTAGAGCATACATTGTCTCTTACTGAGGCTTTATGTGGTTTCCAATTTGTGCTTACTCACTTGGATGGTCGTCAACTCCTTATCAAATCAAACCCTGGAGAAGTTGTCAAGCCTGATTCATACAAGGCTATTAACGACGAGGGAATGCCGATGTACCAGAGACCCCCCTTTATGAAGGGCAAGCTTTACATTCACTTCACTGTGGAGTTCCCCGAGACTCTAAGTCCTGATCAGGTGAAGGTTTTGGAGACTGTTTTTCCAGCTAAACCTTCGTCACAGTTGACCGACATGGAGCTCGATGAGTGTGAGGAAACTACACTTCATGACGTCAATATGGAAGAGGAGACAAGGAGGAAGCAGCAGCAACAACAACAGGAGGCATATGATGAAGATGATGATATGCCTGGTGGGGCACAGAGGGTACAGTGCGCTCAGCAGTAG 1254 0.4577 MFGRAPKKSDSTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDTYGEDALKEGMGGGGGGGHDPFDIFSSFFGGGGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCSGKGSKSGASLKCAGCQGTGMKVSIRQLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVHVEKGMQNSQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKNEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPPFMKGKLYIHFTVEFPETLSPDQVKVLETVFPAKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQQQEAYDEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02104 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 263 353 IPR008971 GO:0006457|GO:0051082
Vivi5g02104 417 CDD DnaJ 14 63 IPR001623 -
Vivi5g02104 417 Pfam DnaJ central domain 146 212 IPR001305 GO:0031072|GO:0051082
Vivi5g02104 417 FunFam DnaJ subfamily A member 2 260 343 - -
Vivi5g02104 417 FunFam dnaJ protein homolog 10 110 - -
Vivi5g02104 417 ProSiteProfiles Zinc finger CR-type profile. 133 217 IPR001305 GO:0031072|GO:0051082
Vivi5g02104 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 143 215 IPR036410 -
Vivi5g02104 417 Gene3D - 146 212 - -
Vivi5g02104 417 FunFam DnaJ subfamily A member 2 146 212 - -
Vivi5g02104 417 CDD DnaJ_C 117 345 - -
Vivi5g02104 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 398 IPR044713 GO:0006457|GO:0030544
Vivi5g02104 417 Coils Coil 415 417 - -
Vivi5g02104 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vivi5g02104 417 Gene3D - 262 343 - -
Vivi5g02104 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 368 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vivi5g02104 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 117 261 IPR008971 GO:0006457|GO:0051082
Vivi5g02104 417 Pfam DnaJ C terminal domain 120 342 IPR002939 -
Vivi5g02104 417 Pfam DnaJ domain 14 71 IPR001623 -
Vivi5g02104 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vivi5g02104 417 Gene3D - 110 258 - -
Vivi5g02104 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vivi5g02104 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vivi5g02104 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vivi5g02104 417 Gene3D DnaJ domain 10 109 IPR036869 -
Vivi5g02104 417 MobiDBLite consensus disorder prediction 378 417 - -
Vivi5g02104 417 SMART dnaj_3 12 66 IPR001623 -
Vivi5g02104 417 CDD DnaJ_zf 146 212 IPR001305 GO:0031072|GO:0051082
Vivi5g02104 417 SUPERFAMILY Chaperone J-domain 8 108 IPR036869 -
Vivi5g02104 417 MobiDBLite consensus disorder prediction 378 397 - -
Vivi5g02104 417 FunFam Chaperone protein dnaJ 3 213 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02104 Vivi-Chr5 86410458 86413220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02104 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 1.46e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g02104 5 86410458 86413220 Vivi5g02104 5 86410458 86413220 ECH
Vivi2g06269 2 197504552 197506825 Vivi5g02104 5 86410458 86413220 PCT