Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02101 ATGGTGAAATCTTCTTCACCTTCCTTTCATAAACTCAGAAACAGCAACAAATACCAACAACAATGGTATTCTGAATATGATGAGAAAGGATATGTTCACAAATGTGAGTATTGTCACAAAGTATTCTCCACAGGCCAAGCACTCGGTGGCCACAAGACCTCTCATCGCTCCAACAAACAGATACGTGATGATCATCATCATGTTAATAAAGTTTATAAAACTATGAAGGTCACTTTTTCTTTATCGTGTTCTCCAAGTAATCATAATAATGATGTTGGTGCCAAACCGATAAGACATTCATGGACTAGGGTTTTCAAGACTACTGTTCATCATCCTCCTACTGCATCAACCTTCAAACCTAACGAACAACAAGAGTTACCAGCTGTTGACTTGTTAAGCTTGCTTCCGCCAAGATTGTATACTACAAAGAAAAGGAGCAGGAGATATCTTATTCATCATGGAGTCGCTAATAATACTGGTGTTGATGAAACAGTGGTGAAGGAGGAGAAGAACCTAAAGGAAGGTGAAACAGTATTAGGTCCAAGAGGTTTTCAAACCCTTGATTTGAATGAGCTTCCGACGAATGATGTTGAAAGAGAATTAGGGCAAAGAGTTGTTTGTAACTTCGATTTGAATGAGATCCCAACAAATGACGTTGCTGATTAA 666 0.3844 MVKSSSPSFHKLRNSNKYQQQWYSEYDEKGYVHKCEYCHKVFSTGQALGGHKTSHRSNKQIRDDHHHVNKVYKTMKVTFSLSCSPSNHNNDVGAKPIRHSWTRVFKTTVHHPPTASTFKPNEQQELPAVDLLSLLPPRLYTTKKRSRRYLIHHGVANNTGVDETVVKEEKNLKEGETVLGPRGFQTLDLNELPTNDVERELGQRVVCNFDLNEIPTNDVAD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02101 221 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Vivi5g02101 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Vivi5g02101 221 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 25 218 IPR044653 GO:0003700
Vivi5g02101 221 Pfam C2H2-type zinc finger 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02101 Vivi-Chr5 86318399 86319064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02101 30 55 C2H2 Transcription Factor Family AT3G19580 69.231 5.62e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02101 - - vvo:131625941 254.603