Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02093 ATGGCCATGAGTGAGGATCATGATGATGATGTTTATGTTGGTTTCATGTGGGAAAATCAATCATGGAGTGATATCTTGAATTCTGAGAATATAGGTGAGAGTAACAAACAAAAGGTAGACATGAAATCATTGAACCATAAAAAAAGACTTCATGATGGAGAAGTTCTTGGGAATAAAAAACGAAGTCGAGGTGGGGGTGTGATTAGAAGTGAGAATGATATGAATGGTGAAGTTAAAGATGAAATGTATCGTGATTTAGATCATGAAATGCATATCTTAACTGAGAGAGAAAGGAGAAAGAAAATGAGAAACATGTTCTCCGGCCTCCATGCTCTGCTTCCTGAACTACCTTCTAAGGCGGATAAATACACAATTGTGGATGCAACAGTGAAGAAAATAAAAAATCTACAAAACACTATTGAAAACTTAGAAAAGAAGAAGCAAGAAAAGCTTAAATGTGTATCTGTGTTTGGAAGTGAGTCATCATCTGTGATCAAAAAATCACATTGGCATCCCTATGAATCAAGGGAAACAATCATTACTGATCATGGATCCTCAAGTTATAATGATAATTTTCCTACTAGTGAAATGACAACTTCATTTCCCAATTCAAAAGCATTAGCACAGTCTGCATCTCCACCGCATCAAGTAGCTTTTCAAACTTGGTCTTATCAAAATGTTGTCTTAAACATTCGGGGTGGTGAAGCACAATTTTGCATATGTGCTACTAAAATGTTAGGTCTTTTGACAAGGATTGCTTTTGTGTTGGAAAAATATAGGATTGATGTTATATCTGCCAGCATTACATGCAATGAAAATGGAAAATTCTACATGATTCAAGCTCATGCTAGGCAATGTCTACATGATTCAATTTCAATGGAGGAAACTTACAAGCAAGCTGCTAGAGAAATTATGATGTGGATCTCTTAA 930 0.3548 MAMSEDHDDDVYVGFMWENQSWSDILNSENIGESNKQKVDMKSLNHKKRLHDGEVLGNKKRSRGGGVIRSENDMNGEVKDEMYRDLDHEMHILTERERRKKMRNMFSGLHALLPELPSKADKYTIVDATVKKIKNLQNTIENLEKKKQEKLKCVSVFGSESSSVIKKSHWHPYESRETIITDHGSSSYNDNFPTSEMTTSFPNSKALAQSASPPHQVAFQTWSYQNVVLNIRGGEAQFCICATKMLGLLTRIAFVLEKYRIDVISASITCNENGKFYMIQAHARQCLHDSISMEETYKQAAREIMMWIS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02093 309 CDD bHLH_AtbHLH_like 91 141 IPR045239 -
Vivi5g02093 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 150 IPR036638 GO:0046983
Vivi5g02093 309 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 26 308 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vivi5g02093 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 136 IPR011598 GO:0046983
Vivi5g02093 309 MobiDBLite consensus disorder prediction 53 72 - -
Vivi5g02093 309 Coils Coil 126 153 - -
Vivi5g02093 309 Pfam Helix-loop-helix DNA-binding domain 89 137 IPR011598 GO:0046983
Vivi5g02093 309 SMART finulus 92 142 IPR011598 GO:0046983
Vivi5g02093 309 Gene3D - 85 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02093 Vivi-Chr5 85581320 85582877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02093 14 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.229 1.34e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi5g02093 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02093 - - psat:127104614 470.314