Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02086 ATGAACAACAACAACAATTCTTCATCTCATTCTCATCATCGTAACCCTAATGATCATCATCATCATCATGATCAATGCCTGAAACACAAACTCTTCATGTGTGAGTTTTGTCACAAAGTGTTCACCACTGGCCAAGCACTCGGTGGCCACAAGACCTCTCATCGCTCCAACAAACAACAGTTAGATGATGATCATTATGTTAATAAGGGTCACAAAACTATGAAGATAACTTTCTCTTTATCTTGTTCTCCAAGTTATCATAATAATGATGTTGATGCCAAACACAAAAGACATTCATGGACTAGGGTTTTCAAGACTACCGTTCATCATCCACCTACTACATCAACCTTCAAGCCTAGCCAACAACAAGAATTACCAGCTGTTGACTTGTTAAGTTTTCTGCCACCAAGGTTGTATAATACCAAGAAAAAGAGCAGGAGATATCTTGTTGATGATGGACTCCCTAATAATACTGCTCCAATATTACCGCTGTTGGATATGTCTTGCGAATCGATTCCAAATCTTGATTTGAATCATCGTGAGTCTAAAAGGAAACTCTCAATCAATGGGAATGATACTGAGATGATGCAGAAACAACATGTGCTGCCAGCAAGTGATCATGTTGATGAAACAGTGGTGAACATGAGTGAAGGTGAAATAAAAACAGAATCACGTCATGAATTAGGGTCAAGAGTTATTCCAAACTTTGATTTGAATGATCTCCCGACTAATGATGTTGAAACAGTGGTGTCAAGAGTTGTTCGAAACTTTGATTTGAACCACCTTCCGGCTAATGATGTTTAA 804 0.3831 MNNNNNSSSHSHHRNPNDHHHHHDQCLKHKLFMCEFCHKVFTTGQALGGHKTSHRSNKQQLDDDHYVNKGHKTMKITFSLSCSPSYHNNDVDAKHKRHSWTRVFKTTVHHPPTTSTFKPSQQQELPAVDLLSFLPPRLYNTKKKSRRYLVDDGLPNNTAPILPLLDMSCESIPNLDLNHRESKRKLSINGNDTEMMQKQHVLPASDHVDETVVNMSEGEIKTESRHELGSRVIPNFDLNDLPTNDVETVVSRVVRNFDLNHLPANDV 267
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02086 267 Pfam C2H2-type zinc finger 32 56 - -
Vivi5g02086 267 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Vivi5g02086 267 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Vivi5g02086 267 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 6 135 IPR044303 GO:0006355
Vivi5g02086 267 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g02086 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi5g02086 Vivi-Chr5 85180030 85180833 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02086 28 85 C2H2 Transcription Factor Family AT1G49900 46.552 1.04e-06 47.8