Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02073 ATGAAGGTTGAACTTTTCATATTTCTCTTATTTTCTACATTGTGTTATGGTAAAACTGACCCTAATGATCTCAAGGTTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTTTGAAATGGCCTGAAAATGGTGATGATCCATGTGGTCCACCTCAGTGGAACTACGTGTTTTGTAACAATGGTAGAGTTACTCAGATTCAAACTAAGAATCTTGGTCTGAAAGGTTCATTGCCTTCGAATTTGAATCAGCTTTCCGAGCTTCAAAATTTAGGTCTACAAAGGAATAATTTATCTGGAATGTTACCTAGTTTGAGAGGATTATCTAAATTGCGGTATGCTTATTTGGATTACAACGAATTCGATGGAATCCCGATGGATTTCTTCGATGGACTCGATAGTCTCGAGGTTTTGTCTTTGGAAGTAAACCCTTTGAATGCTACTAATGGTTGGTTGTTTCCTATGGGATTGAAGAATTCAGTTCAATTGGTGACTCTTTCCCTGGTGGATTGTAATGTGGTTGGTCCTTTGCCTGATTTTCTAGGCACATTGTCGTCCTTATTGAATTTGAGGCTTTCGACGAACAGACTTTCGGGGGAAATTCCGGCTAGTTTCGGGCAATCGTCGGTGCGAGTGCTATGGTTGAATGATCAACAAGGTAGTGGTATGACAGGTTCTATTGATGTTATTGCTTCAATGACATTTTTGACACAGGTTTGGTTACATGGAAACACGTTCACCGGGGTGATTCCGTCGAATATCGGTAATTTAACTTCTCTTAAGGACCTTAACCTCAATCGTAATCAACTTGTTGGTTTGATTCCGGATTCATTAGCAAATATGGAACTTCAAAAACTTGATTTAAGTAATAACATGTTTGTCGGTCCAATACCGATGTTTAAGGCTGCACAACCATTGTATGCTTCGAATTCGTTTTGTCAAACTAAACCTGGTCTTGAATGTGATCCTAATGTTAATATATTGTTGAATTTTCTCTCCGATTTGAATTATCCGTCGTTTGTTGTTCCGAAATGGGTTGGTAATGATCCTTGTGGAGGATCATGGTTTGGATTGAGCTGCTTTCGTAACTCCGTATCGATAATCAATCTGCCTAGAAGAAATCTTACTGGTACGTTGAGTCCTTCGCTTGCTATGTTAGATTCGTTACTTGAAATTAAGCTTTCGGGGAACAATATAACCGGTAAGGTTCCTAGTAATTTTACTGAACTGAAATCTTTGAGGCTGTTGGATTTAAGCGATAACAATTTTGAACCTCCATTGCCGAAATTTCGTGATGGTGTGAAGGTTAGCGTTAACGGTAACCCTCTTTTTGATAATCAACCTCGACCGAGTCCTGCTCCTATTTTAACTCCACCGCCTTTAATTGAACAGCCGTCTTCACCACCACGCAACGTGCCGCAGCCACAACCAAAGCCATCCCCATCCTCGGATAGTCCACCTTCCCCTAGTGAAAGTTCGAGATCCAATCAGTCTAGGAATGTCGAAACAAATCCTCAACCGAGTAATTCGAATAGACTCAAAACAGTAGTGATGGTGGCTGGAGGTATAGTCGTTGGATTTGTAGCTCTTTCGGTTATTGTTTTCTTTGTATGTTGTTGTTCGAAGAAGAAAAAGAAGAAAGTCTCAATTGACGCTTCTAGCCCTCTTGTGGTTCACACTCAAGATCCGTCCGATCCAAAAGTGATGGTTAAATTTGCGGTGTCGGATACCACCGGGAGCTTATCGACAAATACAGGAATAAGTTCTCTGACTAACAATAGCGGTGAAACTGAAAGCTATCATGTAATTGAGTCTGGTGGTAACATTGTCATATCTGTTCAAGTTCTACGCAAGGTCACAAACAACTTCGCTTCGGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAAGGCGAACTAGAAGACGGGACGAAAATAGCCGTGAAAAGAATGGAATGTGGAACCATTAGCAGTAAAGGACTCGACGAGTTTCAAGCAGAAATAGCTGTTCTTTCCAAAGTCCGGCACCGACATTTGGTCTCGCTTCTAGGCTATTCCATTGAAGGAAATGAGAGGCTTTTGGTTTATGAGTACATGCCTCTTGGGGCTCTAAGCAGACATCTTTTCCATTGGAAAAGCTTGAATTTGGACCCGTTGTCTTGGACTCAGAGGATTGTTATAGCATTAGATGTTGCTAGAGCGGTGGAATACCTTCACAGTCTTGCTCGACAAATCTTCATCCATCGAGACCTCAAGTCTTCAAATATTCTACTTGGTGATGATATTCGAGCAAAAGTCGCTGATTTTGGTTTGGTGAAACTTGCACCCGATGGTGAAAAGTCTATGGCAACAAAACTTGCTGGAACATTTGGATACCTTGCCCCAGAATATGCAGTGATGGGGAAAATCACAACTAAAGTGGACGTATTCAGCTACGGTGTCGTGTTGATGGAACTTCTGACCGGACTAATCGCTCTTGACGAGAGCCGACCAGAGGAAAACCGGTACTTAGCCGAATGGTTTTGGCAAATTAAATCGAACGAAGAAACGCTCAAGGCTGCAATCGATCCATCTCTTGAAGTAAACGAAGAAACCTTCGAGAGCATTTCAATTGTAGCCGAACTTGCCGGACATTGCACCGCCAGGGAAGCCAACCATAGGCCAGACATGGGGCACGCTGTCAAAGTGCTATCAGAGTTAGTAGAGAAATGGCGACCGGTTGACGAAGAGTTTGATTACACCGGCGGAATCGACTTCTGTCAACCGCTACCGCAAATGTTGAAGATTTGGAAGGAAGCAGAAGGGAAAGATATAAGCTATGCAAGTAGTACTAATGATAGTAAAGGAAGTATACCAGCTAAGCCTTCTGGTTTTGCAGATTCCTTTACTTCTTCTGATGCTAGATGA 2916 0.4201 MKVELFIFLLFSTLCYGKTDPNDLKVLNDFRKGLKNPELLKWPENGDDPCGPPQWNYVFCNNGRVTQIQTKNLGLKGSLPSNLNQLSELQNLGLQRNNLSGMLPSLRGLSKLRYAYLDYNEFDGIPMDFFDGLDSLEVLSLEVNPLNATNGWLFPMGLKNSVQLVTLSLVDCNVVGPLPDFLGTLSSLLNLRLSTNRLSGEIPASFGQSSVRVLWLNDQQGSGMTGSIDVIASMTFLTQVWLHGNTFTGVIPSNIGNLTSLKDLNLNRNQLVGLIPDSLANMELQKLDLSNNMFVGPIPMFKAAQPLYASNSFCQTKPGLECDPNVNILLNFLSDLNYPSFVVPKWVGNDPCGGSWFGLSCFRNSVSIINLPRRNLTGTLSPSLAMLDSLLEIKLSGNNITGKVPSNFTELKSLRLLDLSDNNFEPPLPKFRDGVKVSVNGNPLFDNQPRPSPAPILTPPPLIEQPSSPPRNVPQPQPKPSPSSDSPPSPSESSRSNQSRNVETNPQPSNSNRLKTVVMVAGGIVVGFVALSVIVFFVCCCSKKKKKKVSIDASSPLVVHTQDPSDPKVMVKFAVSDTTGSLSTNTGISSLTNNSGETESYHVIESGGNIVISVQVLRKVTNNFASENELGRGGFGTVYKGELEDGTKIAVKRMECGTISSKGLDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLDPLSWTQRIVIALDVARAVEYLHSLARQIFIHRDLKSSNILLGDDIRAKVADFGLVKLAPDGEKSMATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLIALDESRPEENRYLAEWFWQIKSNEETLKAAIDPSLEVNEETFESISIVAELAGHCTAREANHRPDMGHAVKVLSELVEKWRPVDEEFDYTGGIDFCQPLPQMLKIWKEAEGKDISYASSTNDSKGSIPAKPSGFADSFTSSDAR 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02073 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vivi5g02073 971 CDD STKc_IRAK 630 903 - -
Vivi5g02073 971 Gene3D Phosphorylase Kinase; domain 1 585 701 - -
Vivi5g02073 971 SMART serkin_6 624 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02073 971 FunFam Receptor-like kinase TMK4 21 319 - -
Vivi5g02073 971 ProSiteProfiles Protein kinase domain profile. 624 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02073 971 SMART LRR_typ_2 109 132 IPR003591 -
Vivi5g02073 971 SMART LRR_typ_2 258 281 IPR003591 -
Vivi5g02073 971 SMART LRR_typ_2 86 108 IPR003591 -
Vivi5g02073 971 SMART LRR_typ_2 411 433 IPR003591 -
Vivi5g02073 971 SMART LRR_typ_2 185 209 IPR003591 -
Vivi5g02073 971 Gene3D Ribonuclease Inhibitor 21 318 IPR032675 -
Vivi5g02073 971 FunFam receptor protein kinase TMK1 585 701 - -
Vivi5g02073 971 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Vivi5g02073 971 SUPERFAMILY Protein kinase-like (PK-like) 602 900 IPR011009 -
Vivi5g02073 971 Gene3D Transferase(Phosphotransferase) domain 1 702 916 - -
Vivi5g02073 971 SUPERFAMILY L domain-like 28 424 - -
Vivi5g02073 971 Pfam Leucine rich repeat 237 293 IPR001611 GO:0005515
Vivi5g02073 971 FunFam receptor protein kinase TMK1 702 919 - -
Vivi5g02073 971 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Vivi5g02073 971 Pfam Leucine rich repeat N-terminal domain 327 361 IPR013210 -
Vivi5g02073 971 MobiDBLite consensus disorder prediction 427 511 - -
Vivi5g02073 971 PANTHER OSJNBA0070M12.3 PROTEIN 5 971 - -
Vivi5g02073 971 MobiDBLite consensus disorder prediction 448 487 - -
Vivi5g02073 971 Gene3D Ribonuclease Inhibitor 324 448 IPR032675 -
Vivi5g02073 971 FunFam Leucine-rich repeat receptor-like kinase 324 448 - -
Vivi5g02073 971 Pfam Protein kinase domain 626 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02073 971 MobiDBLite consensus disorder prediction 944 971 - -
Vivi5g02073 971 MobiDBLite consensus disorder prediction 488 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02073 Vivi-Chr5 84284608 84288525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02073 62 900 Receptor kinase-like Gene Family AT5G49660 29.609 7.54e-77 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vivi5g02073 Pkinase 7.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02073 K00924 - gmx:100815045 1343.95