Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02065 ATGGAATCTAAGATGGATCAGTATGAGATCATGGAACAGATCGGCCGTGGAGCTTTTGGTGCTGCTATTCTTGTTAATCACAAGGCTGAGAAAAAGAAATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAAAGATGTAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCGAGAATCAAGCACCCTTACATTGTCGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAACTAATGAAAAAATTGAACGGCGCTTACTTTCCCGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTTTTGGCAGTGGAATACCTTCATTCAAATTATGTTTTGCATCGCGACCTAAAGTGTTCCAACATCTTTCTCACCAAGGATCATGATATCCGCCTCGGAGATTTCGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCAAATTACATGTGTCCAGAACTTCTCGCAGATATTCCGTACGGATTCAAATCTGATATTTGGTCATTAGGCTGCTGTGTGTATGAGATGGCTGCTCATCGCCCTGCCTTTAAAGCTTTTGATATGGCAGGATTAATAAGCAAGATAAACCGTTCCTCTATTGGTCCGTTGCCTCCGTGTTATTCCCCTTCATTGAAAATACTAATAAAAGGCATGTTGAGAAAAAGCCCCGAGCATCGACCAACGGCATCTGAGGTGTTGAAGCATCCTTATTTGCAACCTTATGTTGATCAATATCGTCCGTCTTTCGCTCCTCTAACAGCCTTTTCTCCTGAAAAACCAATTTCTTCCGTCAATGATACCAAAAAACATATGGCCGAAAGTCAGAACAGTACCAGTTCAAGTAGTGACAAAGATAGTTTAATGTCAATTGAGAGAAACATGGCAACGACAATGGCGACAACGCCAACGAGTGATAGCAAAGCCACTGAGATAGATGTTGCATTAATCAATGATGATGGCTCAGAGCAAGAGGCGATAAAATCATCTCACAGCGAACAGTGTTCTAATGTTGAATCTAAACAGCCAAAAACAATCAGAAATATAATGATGGCATTGAAGGAAGGGAGAGGTAGGGACGCAACTTCTCCGATGAGGGGAAGTCGTATAAAGGCCGTTGGAGTATCGACGCAGAAAGTAAATACAGAAGTATTGTCTAAATTGCCTAAACCTACTATCATTTCTCCTGGTTTGAAGGCTAATGTAGAGTCACCGGGTGTTCCACTTGTAAAGGCAACCCCTGATTCCGCAAAACGAATACAAGGATCGTATCATTCAAAGCTCCAGTTACTAATGACAGAGCCGTCACCGAAAGTTAAACCGAAACTTGATACGACTCCACTATCTGGTTTTATAAAACAAGTTGAAGGAGATGGAGTTCCTCCGAGGCCAAGGCAAAGAACTCCCCCAAGCTTACTTCGACGACCTTCTTTTGCGGGACGAATGAGGCTGGCAGGGGTTGATAATCCAAATGCAGTGAACGATAGCGGGAAGCCAGGTCCAAGTAATTCAGGCCAGGAATCCGAGATGAGCCAATGCCATATGTTCAACGGTGTTCCACGGATTTCTAGACAGATTACTAGAGAACCTCAGAAGGCTTTTGAAAGAAGTTCTAAAGGATTGCAAGCAGACAGTAGTAATTCTGCCTCGTCATCGGTTTCAATTCAAGGGTGTGAACTTGCTGACGATGCAACAACTTTTATTGACATGCGAGAACATATACTTCCCGATCATAACAATGCAACAAACATTGAATCACGTCCAGACAGCAGCCAGTCGACAACGTGTTCGCATTGTAAGATGGCTGAAGAAATGTCCGAGGATTCCAATGAAGCCACCCTGAATTTTCAGAATACTATTAGTAGTAATGAAAAAATGAGATCCAATTTAACTCTTGATGATCTCCCTGTTGAAAATTCTAAGAAAATGTTTGCTTCGGAAGATAGTCTTCTGAAAAATCAGACAGCTGTATCTACTGCTTCCGTGTGTGGTAATAGATCTGTTGACACATCTACTGAAGCGGCAGAAGAAATCGAAGAACTTCGAGATATTTCTAAGGAAATGGCTTTAACCAATTCTCTCAAAAATACACCCTTTATCTCTGGAGAAAAATCTGTTTGTGAAGAATTTGGTTCGGTAAACAATCTCAATAATAGACCTGAAACTGTCACTGGCGATGATAAATTCACTGTGAAGGATCGATTGTCATTGGTCACTGAAACAGCTCCTGTAATTACGGCTTCTAAAATATCAAGCCAAAAAATTTTGCAAGAAAAAGGAACTGTCATCCAGAATCCAGCCCAAGAAAGGCCAGATACTAGTCATCTTCCTGCAGCGTTTGACGATATCATCCATGTTATTCGCCATAGTAGTTACCGTGTTGGGAGTGATCAACCGGTAAAAGAATCAGTGGAAATGGGAGTTCAGAATGTCGACGTTGGCAAGTTCATCAATGCTATGAGAGATGACATAGAAATGAGAAACGTAACCTCTCCCATGACTCTTAAATCTTCAACTTCCTCTGAATCTGCTACCTTGAAATCAAACATTTCCGATCAGTTTGAAATGAGAAATGCAAGCACAAGTTTCTCCGACGCCGAGAGCTTGAAATCGAGTGTCTCCGATCAACCTAGCCTCAAGGAACAAGAAGTGAACAATACTGTTTCTTTAGTTTCAGAATCCGATTCAGCTGAGCATAGTAAATGCAACACTCCTACAACCACCGAAGACAAACCAGAAGGCAAACCACTAGCGAAGGAAATACTTGACGTGAAATCTTTTCAGCAGAGAGCAGAAGCACTCGAAGAGCTCTTGGAATTGTCTGCAGACTTGTTGCAGCAGAACAGATTGGAGGAACTTCAAGTTGTTCTAAAGCCATTCGGCAAAGACAAGGTCTCGCCAAGGGAGACAGCGATATGGTTAGCCAGGAGTCTTAAGGGAATGATGTCGGACGAAAACGGAAGACGTTCGTCATGA 3045 0.424 MESKMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIKHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNYVLHRDLKCSNIFLTKDHDIRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCVYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKILIKGMLRKSPEHRPTASEVLKHPYLQPYVDQYRPSFAPLTAFSPEKPISSVNDTKKHMAESQNSTSSSSDKDSLMSIERNMATTMATTPTSDSKATEIDVALINDDGSEQEAIKSSHSEQCSNVESKQPKTIRNIMMALKEGRGRDATSPMRGSRIKAVGVSTQKVNTEVLSKLPKPTIISPGLKANVESPGVPLVKATPDSAKRIQGSYHSKLQLLMTEPSPKVKPKLDTTPLSGFIKQVEGDGVPPRPRQRTPPSLLRRPSFAGRMRLAGVDNPNAVNDSGKPGPSNSGQESEMSQCHMFNGVPRISRQITREPQKAFERSSKGLQADSSNSASSSVSIQGCELADDATTFIDMREHILPDHNNATNIESRPDSSQSTTCSHCKMAEEMSEDSNEATLNFQNTISSNEKMRSNLTLDDLPVENSKKMFASEDSLLKNQTAVSTASVCGNRSVDTSTEAAEEIEELRDISKEMALTNSLKNTPFISGEKSVCEEFGSVNNLNNRPETVTGDDKFTVKDRLSLVTETAPVITASKISSQKILQEKGTVIQNPAQERPDTSHLPAAFDDIIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINAMRDDIEMRNVTSPMTLKSSTSSESATLKSNISDQFEMRNASTSFSDAESLKSSVSDQPSLKEQEVNNTVSLVSESDSAEHSKCNTPTTTEDKPEGKPLAKEILDVKSFQQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLARSLKGMMSDENGRRSS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02065 1014 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 882 926 - -
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 284 310 - -
Vivi5g02065 1014 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vivi5g02065 1014 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02065 1014 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 475 533 - -
Vivi5g02065 1014 CDD STKc_Nek 7 262 - -
Vivi5g02065 1014 SUPERFAMILY Protein kinase-like (PK-like) 5 322 IPR011009 -
Vivi5g02065 1014 Gene3D Transferase(Phosphotransferase) domain 1 90 338 - -
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 552 577 - -
Vivi5g02065 1014 Coils Coil 940 960 - -
Vivi5g02065 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vivi5g02065 1014 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02065 1014 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 491 - -
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 518 533 - -
Vivi5g02065 1014 FunFam Serine/threonine-protein kinase Nek5 90 338 - -
Vivi5g02065 1014 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 561 577 - -
Vivi5g02065 1014 MobiDBLite consensus disorder prediction 882 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02065 Vivi-Chr5 83896440 83902045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02065 12 273 MAP Kinase Kinase Kinase AT3G06030 32.374 1.63e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vivi5g02065 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02065 K08857 - gmx:100818747 1427.54