Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02049 ATGGCAACGTACTTTCATGGAAGTAGCAACGCTTCTGACATCCAACCGTCGGCAGAAGGTATGCAGACACTTTACCTTATGAATCCAAACTACGTAGTACCGTACTCTGAGGAAGCGCAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACAAACACTCCTCCTTCACCTCACGCGCTTAATGCTTTCAAATTTCCCCACGCGCCTTCTTCACACAATCAACACAACCTAGTTGGATTTAACTTCCATGGATCCAACTCCACCGACAGTTCAACACAGCCGTACCAAGCTTCCGGATTCCACTCCTTCGCCTCCTCCGCGGCCGACACACCTCATCCTCCTCATCCCCAGTATAACACATGGGGATCAGGTAGTTTCGTATTACCTGACCAAACTGTCACGGCGGTGACAGCAACTAACAGATCAGAAAACGTTACTGTTGCCGCAGTGACAACATCTGACGCGACAGAATTTTCGCCGCCACAAATAGCTTATCATCATCGGCCAGTTTTTCAGCGCGGTTTGTCTCTCAGTCTTTCTTCGCAACAACCGCCTTACCGGTCATTTTCTGGCAAGGTTGAGGCATCTCGTGGCAGCGGTGTTGTTTTCGGGTCGAAGTATTTAAAAGTAGCACAAGAGCTTCTTGATGAAGTTGTGAATGTGGATAAGGGAATCATCAATGGAGAATCTGTTGAAGGAGAGAATACTAACAATAATGATAGAGAAAAGCGAAAAGCGAATATTGAATCGAGTTCAAGTGGTGCAAGAGAAAACGATGGAGGGAAACAAGTTGCTGAGTTAAGCACTGCACAGAGACAAGAACTTCAAATGAAGAAGTCAAAGCTTGTTAACATGCTGGATGAGGTAGAACTAAGGTACAAACAATACCACCATCAAATGCATAGTGTGATATCATCATTTGAATCCGCTACAGGTTACGGAGCCGCAAAATCTTATACATCCCTTGCCTTGAAGACAATCTCAAAGCAATTTCGAAGTCTAAAAGATGCAATCGCATCCCAAATCAAGACAACTAGCAAGAGTTTGGGCGAAGATGATTGCTTAGGAGTTAAGTTAGAAGGCTCTAGGCTTAGGTATGTCGATCATCATCTCCGACAACAACGCGCATTACAGCAACTTGGAATGATTCAGAATAATGCTTGGAGACCACAAAGAGGATTGCCTGAACGAGCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAGCATTTCTTGCACCCATATCCTAAGGACTCTGATAAGGTTATGCTTGCAAGACAAACAGGACTTACTCGGAGTCAGGTGTCTAACTGGTTTATAAACGCCCGAGTTCGGCTGTGGAAACCAATGGTTGAAGAAATGTACATGGAAGAAATAAAGGAACAAGAGGAAAAAAATGGATCCAAGGATAACGTCACAAATACATCAAAAGAATCAAGCAAAGAGTTATGGTCATCAACAAATGCTACACAAGAATCAAGTGCTACAAAAATCGACCAAATCAACGTGCTTAATTCGAAAACAGAAACCTTCAACAACAACCAAAACACTTCTCCAACTGAGATTTCAAATTCCAACAACTCAATCTCAGTGTCACCAATGGAAATGAAGTCTAACACAGAATCCAACACAAAGTTTGACAAAAATGGTTACCCTCTATTGAGTGAAAATGAAAACCATGGTGGTGGTTATGGATCAATATTCTCAATGGAAGATATTGGAAGGTATAATGTAAGTGAGCAACTAGCTCCTAGATTCCATGGAAATGGTGTTTCTCTATCTCTTGGACTACCACATAATGAAAATCTCCCTCTCTCTTCAACCCAACATGGATTTCTCTCTCATATGGGAGGGAGGATTGAAATGAGAGAGAATGAAAATGAGTTTTGTGGCATTAACACTACTACTCCTTCTTCTCATTCTGGCACAAGTTATGAGAGTGTTGATATTCAAAACAAAAAAAGGTTTGCTACACAGTTATTACGTAACTTTGCGAACTAG 2010 0.4229 MATYFHGSSNASDIQPSAEGMQTLYLMNPNYVVPYSEEAQNPTQNMLFANPNATTNTPPSPHALNAFKFPHAPSSHNQHNLVGFNFHGSNSTDSSTQPYQASGFHSFASSAADTPHPPHPQYNTWGSGSFVLPDQTVTAVTATNRSENVTVAAVTTSDATEFSPPQIAYHHRPVFQRGLSLSLSSQQPPYRSFSGKVEASRGSGVVFGSKYLKVAQELLDEVVNVDKGIINGESVEGENTNNNDREKRKANIESSSSGARENDGGKQVAELSTAQRQELQMKKSKLVNMLDEVELRYKQYHHQMHSVISSFESATGYGAAKSYTSLALKTISKQFRSLKDAIASQIKTTSKSLGEDDCLGVKLEGSRLRYVDHHLRQQRALQQLGMIQNNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEEKNGSKDNVTNTSKESSKELWSSTNATQESSATKIDQINVLNSKTETFNNNQNTSPTEISNSNNSISVSPMEMKSNTESNTKFDKNGYPLLSENENHGGGYGSIFSMEDIGRYNVSEQLAPRFHGNGVSLSLGLPHNENLPLSSTQHGFLSHMGGRIEMRENENEFCGINTTTPSSHSGTSYESVDIQNKKRFATQLLRNFAN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02049 669 Gene3D - 395 475 - -
Vivi5g02049 669 FunFam BEL1-like homeodomain protein 9 395 457 - -
Vivi5g02049 669 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 482 - -
Vivi5g02049 669 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Vivi5g02049 669 SMART HOX_1 392 456 IPR001356 GO:0003677
Vivi5g02049 669 MobiDBLite consensus disorder prediction 239 254 - -
Vivi5g02049 669 Pfam Associated with HOX 205 343 IPR006563 -
Vivi5g02049 669 MobiDBLite consensus disorder prediction 464 500 - -
Vivi5g02049 669 SUPERFAMILY Homeodomain-like 393 459 IPR009057 -
Vivi5g02049 669 MobiDBLite consensus disorder prediction 233 267 - -
Vivi5g02049 669 Coils Coil 276 296 - -
Vivi5g02049 669 MobiDBLite consensus disorder prediction 475 500 - -
Vivi5g02049 669 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Vivi5g02049 669 CDD homeodomain 392 453 IPR001356 GO:0003677
Vivi5g02049 669 SMART prehox3 200 344 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02049 Vivi-Chr5 83081214 83091761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02049 1 668 Homeobox Transcription Factor Family AT2G35940 43.265 6.86e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi5g02049 POX 6.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02049 - - mtr:25492199 898.656