Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02029 ATGAGTGATATACGGAAGTGGTTCATGAAATCACATGAAAAAACCAACAATGCCGCCGCCGGTAACTCCAAACCCTCCAATCCACCGAAACCTTCTCCGGTTAAACCTGAACCGGAGAAAACGGTACCTGAAGGTCAAACAAGTTCGGGCAGAAGGAAAACTAGCAAATATTTTGATACGGACAAATCAAAGCCGAAGGATGAGATTGAAGAAACACAGGCACTTCCGGCTAAAAGAAAGAATATGAATGATAGTAATGAAGATGATGGAGATGACACTGTTCTGGCAACTAATAAAAAGAAGTTAGTTGGTTCAACTCCTACTAAGAAGTTGAAGAGTGGTTCAGGTAGGGGGATTCCCCAGAAACCTGTAGATTTGGATGAAAGTGATGAAGACGATGAGAAAAATGTGTCTCCGATAAAATCTGGTGGTAGGGGTCGTGGTGGAAGAGGAGCGTCGACACAAACAACTGGTGGGAGAGGCCGAGGGGGTGGTAGGGGAACTGCCAAGAAATCTGCAGATTTGGAAGAAAGTGATGAAGATGATGAGAAAAATGGTGCTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCCTCAACGCCAGCATCTGGTGGGAGGGGCCGAGGAGGTGGTAGGGGTGGATTCATGAATTTTGGTGAAAGAAAAGATCCACCACACAAGGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTGGCTGGTTTAACGTTTGTAATAAGTGGAACACTAGACAGTTTGGAACGAGAAGAAGCCGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAATCAGCAAGAAAACAACTTATTTGTTATGTGACGAAGATATTGGGGGAAGGAAGTCTGAAAAAGCTAAAGAGCTAGGAACTTCATTCCTCACAGAGGATGGATTGTTTGATTTGATCCGGGCATCAAAACCTGCAAAAGCTCCTAAGCAAGAGGAAAGCAAGAAATCTCTGAATAAGGCAGTGCCATCCCCGTCAAAAGTTCCTCTGAAAGTTGAAACTAAGGCTGTTGCAGTGCCATCCCCTTCAAAAATTCCTCTGAAAGCAGAAACAAAGGCCTCTTTGTCTTCATGCTCACCTGCCAACCAAGCCAAGCCAAAGAAAGCTGCTACTGTTCAGTCTAATGTGATGTGGACAGAGAAACATCGACCTACAAATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGAAATTGGTTAAAAGGTTGGCACGAGCAATTTTCTAACACAGGTGGTAATAAAAAAGGAAAAAAGCAGAATGACTCTACTTCCAAAAAGGCTGTCTTGTTAAGTGGAACCCCCGGTATAGGCAAAACAACATCAGCAAAGCTGGTGTGTCAGGAGCTGGGTTTCCTGGCCATAGAGGTAAATGCTAGTGATAGCCGAGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGCGGAAGTAATTCAAATTCTATCAAGGAACTTGTGACGAATGAGGCCCTTGGCACTAATATGAATAGGCCAAAGCAGTCCAAAACTGTGCTCATTATGGACGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCCATTATTTGCATTTGCAATGATCGTTATAGCCAGAAATTAAAAAGCCTAGTGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCTAAGAAGTTTATGGAGGTTGCAAAGGCTGAAAGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCGGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTATGATGATATCAAGCAGCGCTTACTTAGCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTAATTTCAATGCTGGAAAGATGAGAATGGACGAGAGGATTACTCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGAAAATTATATTAATTATAGACCAAGCTCAGCTGGCAAGGATGACAATGGTATAAAACGCATGCAGCTTATTGCCCGCGCTGCCGAGTCTATTGCTGATGGCGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTCTGGCATCATGTATACTTCCTGCTTCTTTGTTACATGGATCAAGGGAAGTACTTGAACAGGGAGAACGAAATTTTAATCGATTTGGTGGTTGGTTGGGGAAGAATTCGACAAGGGGTAAAAACATGAGACTTATGGATGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGACACTATTCGCTTGGAATACCTTACTCTTCTTCTTAAAAAATTGACAGAACCTCTCAAAGTCCTTCCTAAGGCTGAAGCTGTTGAGCAAGTTGTGGAGTTCATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTTAAGGGTCATCCTAATCCACTAGATGGCATTCTGCCTGCCGTCAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAAACTCGGACGGTTCGAGCTGCGGATCTAATTACTCTTCCTGGAATTAAAAAGGCACCTAAAAAGAGAATTGCTGCTATATTAGAACCGGCTGATGAAGGAGTGGAACAAGGTGATGGTAACAATGCCCTGGATGAGAGTGAAGAAGAGAACTCTGACGTGGAAGAGTCAGGCGCTGCAACTGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAGTTCAAAGGGCATGCAAGTACAATTGGAATTAAAGGGGACTGGTAGTGCCAAAAAGGCATCTGGTGGTAGAGGTAAAGGTGCTTCAGCATCTGGCCAGAAAGTTGCTCCAACGGCAAAGGCTCCTGCAAAAAGAAAAAGGTGA 3009 0.4327 MSDIRKWFMKSHEKTNNAAAGNSKPSNPPKPSPVKPEPEKTVPEGQTSSGRRKTSKYFDTDKSKPKDEIEETQALPAKRKNMNDSNEDDGDDTVLATNKKKLVGSTPTKKLKSGSGRGIPQKPVDLDESDEDDEKNVSPIKSGGRGRGGRGASTQTTGGRGRGGGRGTAKKSADLEESDEDDEKNGAKSGGRGRGGRGASTPASGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTTYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDLIRASKPAKAPKQEESKKSLNKAVPSPSKVPLKVETKAVAVPSPSKIPLKAETKASLSSCSPANQAKPKKAATVQSNVMWTEKHRPTNPKDIIGNQSLVLQLRNWLKGWHEQFSNTGGNKKGKKQNDSTSKKAVLLSGTPGIGKTTSAKLVCQELGFLAIEVNASDSRGKADSKIEKGISGSNSNSIKELVTNEALGTNMNRPKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIKQRLLSNAKDEDISPFTAVDKLFNFNAGKMRMDERITLSMSDPDLVPLLIQENYINYRPSSAGKDDNGIKRMQLIARAAESIADGDIVNVQIRRYRQWQLSQTSSLASCILPASLLHGSREVLEQGERNFNRFGGWLGKNSTRGKNMRLMDDLHVHILASRESSSGRDTIRLEYLTLLLKKLTEPLKVLPKAEAVEQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGILPAVKSALTKAYKEQSKTRTVRAADLITLPGIKKAPKKRIAAILEPADEGVEQGDGNNALDESEEENSDVEESGAATGEKLKSELQSLSSKGMQVQLELKGTGSAKKASGGRGKGASASGQKVAPTAKAPAKRKR 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02029 1002 Gene3D - 650 760 - -
Vivi5g02029 1002 CDD BRCT_RFC1 236 314 - -
Vivi5g02029 1002 CDD AAA 438 541 - -
Vivi5g02029 1002 ProSiteProfiles BRCT domain profile. 236 317 IPR001357 -
Vivi5g02029 1002 Gene3D - 388 577 IPR027417 -
Vivi5g02029 1002 SUPERFAMILY post-AAA+ oligomerization domain-like 649 794 IPR008921 GO:0003677|GO:0006260
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 947 964 - -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 925 939 - -
Vivi5g02029 1002 FunFam Replication factor C subunit 1 212 315 - -
Vivi5g02029 1002 FunFam Replication factor C subunit 1 578 649 - -
Vivi5g02029 1002 FunFam Replication factor C subunit 1 650 759 - -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 54 96 - -
Vivi5g02029 1002 Pfam Replication factor RFC1 C terminal domain 718 880 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vivi5g02029 1002 Gene3D - 578 648 - -
Vivi5g02029 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 638 IPR027417 -
Vivi5g02029 1002 SMART BRCT_7 238 316 IPR001357 -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 911 1002 - -
Vivi5g02029 1002 FunFam Replication factor C subunit 1 389 577 - -
Vivi5g02029 1002 SUPERFAMILY BRCT domain 236 317 IPR036420 -
Vivi5g02029 1002 CDD HLD_clamp_RFC 578 638 - -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 1 238 - -
Vivi5g02029 1002 PIRSF RFC1 1 979 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Vivi5g02029 1002 Gene3D BRCT domain 213 315 IPR036420 -
Vivi5g02029 1002 Pfam ATPase family associated with various cellular activities (AAA) 445 544 IPR003959 GO:0005524|GO:0016887
Vivi5g02029 1002 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 984 - -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 220 234 - -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 167 190 - -
Vivi5g02029 1002 SMART AAA_5 441 579 IPR003593 GO:0016887
Vivi5g02029 1002 Pfam BRCA1 C Terminus (BRCT) domain 238 313 IPR001357 -
Vivi5g02029 1002 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02029 Vivi-Chr5 81360437 81369534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02029 1 959 Core DNA Replication Machinery Family AT5G22010 64.330 0.0 1081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02029 K10754 - gmx:100790070 1306.97