Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02020 ATGTTTAACGGTATGATGGATCCTGATTTGATCAGAATCGCTCAGGAACAGATGAGTCGCATGTCTCCCGCTGATATGGCTCGGATCCAACAACAGATGATGTCGAATCCAGATTTGATGAGGATGGCTTCGGAGAGTATGAAGAATATGAATCCGGAAGATTTTAAACTTGCTGCGGAACAGTTGAAGCATACTCGGCCGGAAGAGATGGCGGAGATTGGTCAGAAGATGGCTAATGCGTCGCCGGATGAAGTAGCGGCTATGCGTGCTCATGCGGATGCGCAGATTAAGTATCAGTTGAGTGCGGCGGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAACCAAGGAAAGTTTGATGATGCTTTGCAGAAGTATAAGTTGGCCAAGGAAAACATCAGAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCGTGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGCAGTATGATGAATGCATACAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTTAAGGCTCTTTATCGAAGAGGTCAGGCATATAAGGAGCGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGCAATGCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTCTACGGGACACCAAGGAACAGTTGATAAAGGAAGGCGGTCATTGTGCTCCTGGAAGATTAGTAATTGAAGAAATAACTGAAGAAGTTGATAATGTGCCTTCTGGAAACAACAGAAACACTTCTTCCGAACAAACGTTTGATCAACCAAAAAAGTCTGTTGACTCTTCTAAGAGTTACAATATAGCTAACAATGGAAATCTAAAATCAAATTCAGACAGTATAGATACACTGAAGAAAGATCCTGAAGCCATCAGATCATTCCAAAATTTTATTTCCAAAGCTGATCCTGCCACTCTGGCTTCTTTGAACATTGGACAATCCAATGACGTGTCTCCAGATATGATTAAAGCGTCCTCGGATATGATCGGCAAGATGTCACCTGAGGATCTTCAAAAAATGCTCGACATGACGTCTTCATTTCAAGGAAACAACCCATTTCTCAGAGGAGGTTCCTCTGAATCTCCTTTCAACTCTGGATCAATTCCTCCCAATGTGACACCTGATATGTTAAAAACAGCAACTGATATGATAAGTAAAATGCCACCAGATGACCTTAAGAAGATGTTTGAAATGGCATCCTTAATGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCTGTAGACAAGAAAGAAAGAAATTTTTCACAGTCAAACTTCCCATCCTCAAGCACCAGTCGTGCTTTTGGAGAATCCAGTTCTTCTGACAATGCATTTTCAAATATTATAAATGGTTCAGAGCCAAACTTCCCATCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGCAGATGTTCACATCAATGGTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAAAACAATTTGGTTTCGATCTTTCACCAGAAGACGCTGAAAAAGCTCAGCAAGCCATGTCATCCATATCACCAGAGAAATTGGAGAAAATGATGCTTTGGGCGGACAGGCTTCAAAGAGGAGCTGAATGTGCAAAAAAGACAAAGAACTGGGTTCTAGGGAAATCCGGCCTTGTCTTTGCAATATGCATGCTCATTTTGGCTTTCATTCTTCACCGGTTAGGTTACATTGGTAGCTAG 1761 0.4196 MFNGMMDPDLIRIAQEQMSRMSPADMARIQQQMMSNPDLMRMASESMKNMNPEDFKLAAEQLKHTRPEEMAEIGQKMANASPDEVAAMRAHADAQIKYQLSAAEMLKKQGNELHNQGKFDDALQKYKLAKENIREIPSFQSRKLLLACSLNLMACYLKTRQYDECIQEGSEVLAYDAKNLKALYRRGQAYKERGLLQDAVTDLSNALEVSPDDDIIGELLRDTKEQLIKEGGHCAPGRLVIEEITEEVDNVPSGNNRNTSSEQTFDQPKKSVDSSKSYNIANNGNLKSNSDSIDTLKKDPEAIRSFQNFISKADPATLASLNIGQSNDVSPDMIKASSDMIGKMSPEDLQKMLDMTSSFQGNNPFLRGGSSESPFNSGSIPPNVTPDMLKTATDMISKMPPDDLKKMFEMASLMKGKESIPSAAAVDKKERNFSQSNFPSSSTSRAFGESSSSDNAFSNIINGSEPNFPSSSTDLQEQMRNQMKDPAMRQMFTSMVKNMSPEMMANMGKQFGFDLSPEDAEKAQQAMSSISPEKLEKMMLWADRLQRGAECAKKTKNWVLGKSGLVFAICMLILAFILHRLGYIGS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02020 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Vivi5g02020 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Vivi5g02020 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Vivi5g02020 586 Gene3D Tetratricopeptide repeat domain 90 231 IPR011990 GO:0005515
Vivi5g02020 586 SMART CBM 476 523 IPR006636 -
Vivi5g02020 586 SMART CBM 22 58 IPR006636 -
Vivi5g02020 586 SMART CBM 299 352 IPR006636 -
Vivi5g02020 586 MobiDBLite consensus disorder prediction 421 473 - -
Vivi5g02020 586 MobiDBLite consensus disorder prediction 249 291 - -
Vivi5g02020 586 SUPERFAMILY TPR-like 96 220 IPR011990 GO:0005515
Vivi5g02020 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 373 - -
Vivi5g02020 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vivi5g02020 586 MobiDBLite consensus disorder prediction 247 293 - -
Vivi5g02020 586 MobiDBLite consensus disorder prediction 429 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02020 Vivi-Chr5 80704578 80711216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02020 93 213 Calmodulin-binding Proteins AT5G48570 35.433 4.70e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02020 - - gmx:100800315 890.567