Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01976 ATGAAGTGGAAGAGAGGACATGTTATAGGCCATGGCTCAACCGCCACCGTCTCTCTTGCCACCACCGCTAACGGAGACGTCTTTGCCGTAAAGTCGTCGGAGCTATCGTGTTCCGAGCCTCTAAAGAGGGAGGAGAGAATTCTATCTTCTATATCTTTTCCCAATTCTTATTTGGTTGCTTACAGAGGGTGTGATATTTCTATGGAGAACAACAACAACACGCTCATGTACAATCTTTTCATGGAGTACATGCCATTCGGTTCGGTTAGTCAGCACGGTGGTCTACTCGAAGAGCAGACCATTGTATGCTATACAAGGCAAATTGTTAAAGGGTTAGAGCATTTACATTCAAAAGGATTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATTGGAGAACAAGGAGCCAAAATTGGAGACTTTGGATGTGCTAAGCGTGTAAATGAAGCTGACGCACCAATTCGCGGCACCCCGATTTTCATGGCACCGGAGGTGGCGCGCGGCGAGGAACAAGAATGTCCTAGTGATATCTGGTCACTTGGTTGCACTATAATCGAAATGTTCACCGGTTCTTCGCCGTGGCCTAATGCAGATGACCCTATTTCAGCACTTTTTCATATAGCATATTCCAATGAAGTTCCATTGATTCCATGTTTATTATCTGATCAAGCAAAGGACTTTTTAGGGAAATGTTTAAGGAAGAATCCAAAAGAGAGGTTTACAGCTAGTCAACTTTTGAAGCATCCATATCTTGAAGAGTTGAGTTCTAGTGCTAAGCAAGTTGTGGAACCTAATTCATATTCACCAACAAGTATTCTCGAACAAGGCTTTTGGAGTTCAATGGAAGAATCAGAGAGCCTTAAGTTTGGCAATTTGATTCACACAAAAAGTCTTGAGACTTTGGTTGATGATAGAATCAGAAGGTTAACAGTTGAGCCTTGTTTGGCAAGGTGGCATGATAATAATGATGATGTTGATGAAAATTGGATCACAATTAGAGAGAATGAAGTTGATAGTTTTTGCAATTGTGGGTCAGAATTAGGTTCAACAAGTGATGAGTTGATTTTGAAAAGGTTGGTAGAAAGTAATGTGAAAGATGGAATTAGTGGGCATGATTTTAGGGATGGTAGTTTTGTAGGTAGTAATTTTAATTTTCATGTAGGTATTGTAAAGATGCTACTTCCATCAACATTAGATGGTTTATAA 1209 0.4061 MKWKRGHVIGHGSTATVSLATTANGDVFAVKSSELSCSEPLKREERILSSISFPNSYLVAYRGCDISMENNNNTLMYNLFMEYMPFGSVSQHGGLLEEQTIVCYTRQIVKGLEHLHSKGLVHCDIKGANILIGEQGAKIGDFGCAKRVNEADAPIRGTPIFMAPEVARGEEQECPSDIWSLGCTIIEMFTGSSPWPNADDPISALFHIAYSNEVPLIPCLLSDQAKDFLGKCLRKNPKERFTASQLLKHPYLEELSSSAKQVVEPNSYSPTSILEQGFWSSMEESESLKFGNLIHTKSLETLVDDRIRRLTVEPCLARWHDNNDDVDENWITIRENEVDSFCNCGSELGSTSDELILKRLVESNVKDGISGHDFRDGSFVGSNFNFHVGIVKMLLPSTLDGL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01976 402 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01976 402 CDD STKc_MAPKKK 2 252 - -
Vivi5g01976 402 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vivi5g01976 402 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 299 - -
Vivi5g01976 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Vivi5g01976 402 SUPERFAMILY Protein kinase-like (PK-like) 3 274 IPR011009 -
Vivi5g01976 402 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01976 402 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g01976 402 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Vivi5g01976 402 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01976 Vivi-Chr5 76646002 76647395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01976 1 336 MAP Kinase Kinase Kinase AT1G05100 49.429 7.96e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi5g01976 Pkinase 7.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01976 K20716 - gmx:100794648 449.129