Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01963 ATGGAACTTCGTCGTCGTAAAACTCTCCTCGATGATGTGGATTCTGCGGCTGACAAGGGGAAGCAGCCCATGGATGATACTGGCAGTGACACTGATGAAAGTGATCTTGATTCGATTTGGAGTTCTGATTCTGATTTTGAAGCTGAAGACTTTGATGGGCAGCTCACTTCTGACTTGAATCAAGTCCCAACTTTAAGCATGAGTGATTCTGATACTGATTCTTTAGTTAAAAAGATAATGGCACAGTCTCGAAAGAGAGGAAGAGAATCCGTGATAAAAATCGAAGACCTGAGTGATATAGAGAGAATGCTGGAGGAGCATGTTGTTGAAGCTCCAATTGATCCACCTAAGGTGAAAAAGAAGCAAAAAGCAAAGAAAACAAAAAATCCTAAGCCAGTGTTGTTATGGCATGCTTGGAGAGATGAACATGACAGATGGATTGATCAGAATTTGTTGGAAGATGTTAACTTAGATCAAAGTGAAGTGATGAATGAGACGGCCGAGGCATCCTCGGATCTGATTGTTCCTTTGCTGAGGTACCAAAAGGAATGGTTAGCCTGGGCTCTGAAGCAAGAAAGTTCTGTAACTAGAGGAGGAATCCTCGCCGATGAAATGGGCATGGGGAAAACTATTCAAGCAATTGCCCTTGTCCTTGCTAAACGGGAATTTCAACAAATGAGTTGCGAACCAGATGAACACTCAGATTCACCCGGGTCATCTAAAGTCCTTCCTGCGATCAAAGGAACCCTTGTCATCTGTCCCGTGGTTGCTGTTACTCAGTGGGTTAGCGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTTCTGGTTTATCATGGGGCAAAAAGAGGGAAGAGTGCTGAACAGTTCTCAGAGTATGATTTTGTAATAACAACATATTCTATTGTTGAATCGGAGTACAGAAGACATGTGATGCCTCCTAAGGAGAAGTGCCAATATTGTGGAAGATTATTTAAGGAGAGTACTTTAACTTTTCACCTGAAGTACCATTGTGGGCCCGGTGCTATTAAAACCGAAAAACAATCAAAGCAAACGAAGAAAAAGAGAAGTGGTCAGAGTTCAAAGGGGGATGGAGGGTTGAAGCAGGGCTCTATCAAGAAGAAGGAGAAGAAAATGAGCTCAAGAATAGAAGATAATGAGAAGTCATGTCTCCATGCTGTTAAGTGGCAGAGGATCATATTGGATGAGGCACACTATATAAAATCTAGGCATTCTAACACTGCAAAAGCAGCTCTTGCTTTAGAGTCTTTCTACAAATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTATTCCTATAACCTGTGCAAGGACTGTGACTGCAGGACACTTAATCATAGCTCCTCTAAACAATGTTCAAACTGCCCCCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAAAATATTGCCACACCAATTCAATCATATGGATATGGTGATGGGGGGAAAAGAGCCATGATATTGCTCAAAAACAGAATTTTAAAGAGCATAGTGTTAAGGCGAACTAAAGTTGGCAGGGCTGCTGATCTGGCACTTCCTCCTAGGATCGTATCATTGAGGAGGGATAGCCTAGATACAAAAGAACAAGACTATTATGAATCACTATACAGTGAAAGTCAAGCACAGTTTAATACGTACGTACAAGAAAATACTTTGACGAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCTTATCTTGTGGTGTATTCTGCAACTGCAGCAGCACTAAAACAAGGGAACTTGGCTAGTAATGGTAATGTTGAAGTAGAATGTGGCCTTTGTCATGATGTAGTTGAAGATCCCGTGGTTACCTCTTGTGAGCATACTTTTTGCAAGGCATGCTTGATAGATTTCTCTGCTTCCTTAGGTCAAGTATCATGCCCCTCTTGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAAGGATGCTGTGGTTCCTAAAACAACAATTAAGGGGTTCAGACCTTCAAGCATTTTAAACAGAATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTAGATCTATGGTTGAAATGGATGGTTCTGCAAAAGCTATTGTTTTTAGCCAGTTTACATCATTCTTGGATCTTATAAACTACTCCTTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGGTTGGAAGTATGACATTGGCTGCTCGGGACGTCGCCATTAAGAAATTTACCGACGACCCAGACTGTAGAATTTTCCTCATGAGCTTGAAAGCTGGAGGCGTTGCTCTGAATTTGACCGCAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAGGACAGAATTCATCGTATAGGGCAATACAAACCAATCAAAATTGTGAGATTTGTCATTGAAAACACAATCGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTAGTATTTGAAGGGACTGTAGGCGGTTCTTCTGAGGCTCTAGGGAAGTTGACGGTGGCCGACTTAAAATTTCTCTTTGTTACCTAA 2631 0.4162 MELRRRKTLLDDVDSAADKGKQPMDDTGSDTDESDLDSIWSSDSDFEAEDFDGQLTSDLNQVPTLSMSDSDTDSLVKKIMAQSRKRGRESVIKIEDLSDIERMLEEHVVEAPIDPPKVKKKQKAKKTKNPKPVLLWHAWRDEHDRWIDQNLLEDVNLDQSEVMNETAEASSDLIVPLLRYQKEWLAWALKQESSVTRGGILADEMGMGKTIQAIALVLAKREFQQMSCEPDEHSDSPGSSKVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKSAEQFSEYDFVITTYSIVESEYRRHVMPPKEKCQYCGRLFKESTLTFHLKYHCGPGAIKTEKQSKQTKKKRSGQSSKGDGGLKQGSIKKKEKKMSSRIEDNEKSCLHAVKWQRIILDEAHYIKSRHSNTAKAALALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLNHSSSKQCSNCPHSSVRHFCWWNKNIATPIQSYGYGDGGKRAMILLKNRILKSIVLRRTKVGRAADLALPPRIVSLRRDSLDTKEQDYYESLYSESQAQFNTYVQENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSATAAALKQGNLASNGNVEVECGLCHDVVEDPVVTSCEHTFCKACLIDFSASLGQVSCPSCSKLLTVDLTSNKDAVVPKTTIKGFRPSSILNRIQIENFQTSTKIEALREEIRSMVEMDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLAARDVAIKKFTDDPDCRIFLMSLKAGGVALNLTAASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIKIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLKFLFVT 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01963 876 SMART helicmild6 737 820 IPR001650 -
Vivi5g01963 876 SMART ultradead3 173 470 IPR014001 -
Vivi5g01963 876 SUPERFAMILY RING/U-box 620 668 - -
Vivi5g01963 876 Coils Coil 870 876 - -
Vivi5g01963 876 Pfam Helicase conserved C-terminal domain 709 820 IPR001650 -
Vivi5g01963 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 695 IPR013083 -
Vivi5g01963 876 CDD SF2_C_SNF 704 831 - -
Vivi5g01963 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 874 IPR027417 -
Vivi5g01963 876 Gene3D - 179 322 IPR038718 -
Vivi5g01963 876 MobiDBLite consensus disorder prediction 1 43 - -
Vivi5g01963 876 Pfam Zinc finger, C3HC4 type (RING finger) 623 663 - -
Vivi5g01963 876 MobiDBLite consensus disorder prediction 1 28 - -
Vivi5g01963 876 SMART ring_2 624 663 IPR001841 -
Vivi5g01963 876 Gene3D - 541 872 IPR027417 -
Vivi5g01963 876 Pfam SNF2-related domain 192 600 IPR000330 GO:0005524|GO:0140658
Vivi5g01963 876 MobiDBLite consensus disorder prediction 29 43 - -
Vivi5g01963 876 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 49 874 - -
Vivi5g01963 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 525 IPR027417 -
Vivi5g01963 876 Coils Coil 693 713 - -
Vivi5g01963 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 706 866 IPR001650 -
Vivi5g01963 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 452 IPR014001 -
Vivi5g01963 876 MobiDBLite consensus disorder prediction 369 385 - -
Vivi5g01963 876 ProSiteProfiles Zinc finger RING-type profile. 624 664 IPR001841 -
Vivi5g01963 876 MobiDBLite consensus disorder prediction 346 385 - -
Vivi5g01963 876 ProSitePatterns Zinc finger RING-type signature. 639 648 IPR017907 -
Vivi5g01963 876 Gene3D - 329 540 IPR038718 -
Vivi5g01963 876 CDD DEXDc_SHPRH-like 177 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01963 Vivi-Chr5 76215297 76222815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01963 109 876 RAD5 or RAD16-like Gene Family AT1G05120 66.453 0.0 1059
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi5g01963 SNF2_N 1.8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01963 K15083 - qsa:O6P43_028664 1161.36