Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01889 ATGGCTGACATAGAAACCTCCTCCAACAATGTTTCACCTGATTCTACAGATCAGCAATCTAGCACAGGTTCAAATGTTGAATTTTCTGAAAATGAGGAAATGCTTATCACTATGGTTTATAATCTGGTTGGGGAGAGGTGGTCATTGATTGCTGGAAGAATTCCGGGAAGAACAACGGAAGAAATAGAAAAGTATTGGAATTCAAGATACTCAACAAGTGAATGA 225 0.3822 MADIETSSNNVSPDSTDQQSSTGSNVEFSENEEMLITMVYNLVGERWSLIAGRIPGRTTEEIEKYWNSRYSTSE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01889 74 Gene3D - 27 70 - -
Vivi5g01889 74 SMART sant 24 72 IPR001005 -
Vivi5g01889 74 FunFam MYB-like transcription factor 27 69 - -
Vivi5g01889 74 Pfam Myb-like DNA-binding domain 27 68 IPR001005 -
Vivi5g01889 74 CDD SANT 27 67 IPR001005 -
Vivi5g01889 74 ProSiteProfiles Myb-like domain profile. 28 70 IPR001005 -
Vivi5g01889 74 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 27 71 - -
Vivi5g01889 74 MobiDBLite consensus disorder prediction 1 30 - -
Vivi5g01889 74 SUPERFAMILY Homeodomain-like 27 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01889 Vivi-Chr5 71451537 71452511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01889 28 71 MYB Transcription Factor Family AT5G14750 52.273 6.26e-13 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi5g01889 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01889 - - gmx:100500494 107.842