Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01864 ATGTTTGAACGGAAGCAGTTCAAGACTAGGTTATGCGCTCTCTACCAGAAAGGTCGCTGTAATCGCCTCAACTGTTCATTCGCGCACGGGAATGCCGAACTTCGACGTTTCTCTTCCTCCTCTTATAATGGAAGGAAAGACTATTTAGGTAATGACTTGAGGGATAAACTTGACAGAAGGCAATTATCACCTCCAAGATATTCACCAGCTCGTGATGCAAGAGGTCGACAGACTATTCGCGAATACAGTCCACCGAGGTCTCCAGAGAAAAGAAGTGACAGAAGACACAAGAGAAAACAGGTCATCAGTGGCCAAAGTGATATTTCTGGAAGTTTAAAAGTCTTTGATAGAATTAACGATCAAGTTAAAGAAGGAAAAATGCTTTCCTCTGGTTCTAGAAATACTGTTGAAGATCAGCTGAAGAAAGTACATTCTGATATCAAAACTCTTGAGAACCGAAAATTCCAATTATCGGTCTACCTAGATGAGAGTGTTCAAGAAGTGGATGGCCTTAATTCTAGAATTCAGGAGCTTGAGGCTCAGTTAAACAAGGAGAACGAGGGGTATAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTCGAATGCATAATCATAATTTGGAGCTGCAAGATGAACTGAAGAGATCACAGGTTCGACTCCAAAGGTTTGGAGATCACCTTTTGACAGACATTTCTAGAATTGGTGCTAGTGAGGAAGATTTAAATGTTGATATTGTAAACAATGGTGAGAATACTGGTCTACCTCCAATCACTAAACTTACTTTGGAGCAGAATGGCGGATCTCCCTGCAGAAAAAGGCTGCATGTGGAACGAGATTTTGTGGAAGAGTTAAAACAAGATAAGTCAAAAGTCGGGCATTTGGTTGAAACAGAAAGAAGTGGGAAGCGATCTCGATGGAGTTTGTCTGCTAAAACGAATGATAAGGATAATGAAGAGGCACCAGGTAATGGAATTGAAGTCACTAGACACCTAGATCTTGAAGGAAAATACAAGAAAGGAATATGGAATTCTTCAAACAACATTCATTCAGAAAAGCCGAAGGAATCCAGGATTGAGGTGCCATCAACCAGCATGGCAGCTCATGTGTTTGATGAGGAAGTTGATATTGAACATGACAATGGAACTGATAGCACTGAAAATGCAAAGACAGAAAATAAGAATGGAGTGGAGTTCCAGGTGAAGGGCATATCTCACATGCTTACCCCAGATTTGATTCCCCAGTTTGCGGGTAAACGCGAGATGATGGATGTGGATGGTCTTAATGAAGATGCAGCAGGAGCACAAGTTGTGAACTAA 1317 0.4093 MFERKQFKTRLCALYQKGRCNRLNCSFAHGNAELRRFSSSSYNGRKDYLGNDLRDKLDRRQLSPPRYSPARDARGRQTIREYSPPRSPEKRSDRRHKRKQVISGQSDISGSLKVFDRINDQVKEGKMLSSGSRNTVEDQLKKVHSDIKTLENRKFQLSVYLDESVQEVDGLNSRIQELEAQLNKENEGYKRITSRIRKFVRMHNHNLELQDELKRSQVRLQRFGDHLLTDISRIGASEEDLNVDIVNNGENTGLPPITKLTLEQNGGSPCRKRLHVERDFVEELKQDKSKVGHLVETERSGKRSRWSLSAKTNDKDNEEAPGNGIEVTRHLDLEGKYKKGIWNSSNNIHSEKPKESRIEVPSTSMAAHVFDEEVDIEHDNGTDSTENAKTENKNGVEFQVKGISHMLTPDLIPQFAGKREMMDVDGLNEDAAGAQVVN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01864 438 Coils Coil 133 153 - -
Vivi5g01864 438 MobiDBLite consensus disorder prediction 48 104 - -
Vivi5g01864 438 MobiDBLite consensus disorder prediction 292 323 - -
Vivi5g01864 438 Coils Coil 161 195 - -
Vivi5g01864 438 Gene3D - 1 36 - -
Vivi5g01864 438 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 426 IPR045868 GO:0046872
Vivi5g01864 438 MobiDBLite consensus disorder prediction 73 90 - -
Vivi5g01864 438 MobiDBLite consensus disorder prediction 48 62 - -
Vivi5g01864 438 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01864 Vivi-Chr5 70016454 70029378 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi5g01864 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01864 - - gmx:100811131 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01864 5 70016454 70029378 Vivi5g01864 5 70016454 70029378 ECH