LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi5g01794	ATGACAACTGTTTTTCGCTTCTTCAACATGTATGCTTTTTGGTTTCTAATATGTTCTTCTCCAACGTGTTTCGCAGGGGACACTTTGAAAGCTGGCCAGAAGATCATAGGCGATGACACCAACCTTGTTTCAGCTGGAAAAATATTTGAACTAGGCTTTTTTACTCCTAGCATCACCGGTGGTTCACAAAACTACTTAGGCATATGGTATCGCATGCAAGAGGGGTTAGAACAACCTCAAAAACAAATAGTTGTGTGGGTTGCCAACAGAGACAACCCTGTAGCTGTTGGTTCAACTGGAGTTTTTAAAATAGCTGGGGATGGGAATCTTGTAGTTGAAGACACATCCGGTAATAACAAAACCTACTGGTCATCCAATTCCAGTTCCAAATCCAAAGTCAAAGTCTTTTCTAATTCTTCGCCAAAAAATATGATACTGAAACTCATGGATTCTGGTAACCTTGTGTTATATGATGATGAAGACAAGGAAGTGAAACTATGGGAGAGCTTTGAAAATCCATCTGACACGTTCCTACCAGGTATGAAGATGGATAGGAATCTGAAATTAACTAGTTGGAAAGGTGACGATGACCCAGGAAGTGGGAATTTCAGTTTTAAGATGGAAGGAATAGGGGGCATCCGTTTCATAATCTTGAACCGAGACCAAATTTATTGGGAGAGCGAATTTTACGAGACAAGGAATTACAAAGTAAATAATGATAAATTGGATGACATCAGCTCAGAGGTTTACAGCTTGTTGACCAACTTCAGTTTACTTAGATGGCAATACGGGAATACAAGGTTGTTCCTCGATTCTACAGGTATGATTCAGTTGGCGGATGTCAATTTGTTGGAAGTTGAACCGTCGGGCAGATGGAAGCAGCCAAAAACCAATTGTTTGCGATATAATTATTGTGGAAACTTTGCTAGCTGCAACGACAACGATGGTGACTCCCCATGTAAATGCTTACCTGGATTCGATAATGATAATCTGGGAGATGGAGATTATCCTCTATTAGACGAGGCAAGTTGTACGAGGAGAAAATCAGCACCGTGTACTGGAAATGACACGGCGTTTTTGAACTTGACCATGATTAAAACAGGAAGGCCGGATATAAAGAAAATGGTAGAATACGAAGAAAATTGCACATCTATGTGCGTTGGGATGTGTCCCCAGTGCCAAGCTTACTCATATGCTCCACTTCCTACTGAACACCAGCGTACTGCTAATAATCCATCAAACTGTTGGATCTGGACACACAATTTAACTACTCTTAAAGAAAACTATACTAATTGGGAGGATGACCGCAGACTCTATGTCCTAGTAGATAAATCAGACATAGCACCAACTCCAAGAACTTGTGAGCCTTGTGGTACAAACATAGTTCCTTATCCTCTCAGCACCGGATCCAAATGTGGAGACCCCAGATACTTCAATTTTAGATGCAACACCTCCATGGGTCAACTCAGCTTCAGCAACAATACCAACAATACCAACAACACCAACAGCAACATTAATTACAGAGTTATTCGTGTAAACCCCAGTTCAAGAACGTTTACCATTTATCAAGAGGTCAAAGATAGTTTGATTAATCGATATTGTGAAGGTTCGAAGAGTGTGGGAAATCTAAAGGTTTCTTCACCATTTGGCCTGTCTAGTGACCAACTATGCTCTAAACAGGTGGAAGTTAGTTGGGAAGCGCCTTCCAAAGAACCCATATGTGATAACTCTGCTGATTGCCTTGGTTGGAAACATTCTACTTGCAGTGAAGGAAAGTGTCTTTGCAATGCAAACTATCATTGGAGTGGCGAGTTTTTAACTTGTACCAACACAGATTCTTCAGAACATGGATCATTTCCTAATGCTACAAAACACTCCACAAAAGCAAGCTCTTCTTTCTCTTTGATTCTTGGCTTAACTCTTCCGAGTGTGGTTATTCTAGCATGCATCGTTATTTTGGTTTATGTATGCAGACGGAGAATAGCTCTTATGGTTAAGCAAGACAAGGAAAGCATTCAGAGAAACATTAGAGGGCACTTCACCGACAGTGAAAGGCATGTGAAGGACTTGATAGACATGGAGGGGTTGGAAGAGAATGATAATGAAGGAATAGAGGTTCCTTACTTTGATTTTGAGACCATAGTGACGGCAACTAATAATTTTTCAGATGCAAATAAGCTTGGTAAAGGTGGTTATGGACCAGTTTATAAGGGTACACTACAAGGTGGTCAAGAAATTGCAGTGAAGAGGCTTTCAAGTGTGTCATCACAAGGTTTACAGGAATTTAAGAATGAAGTTATTTTGATTGCCAAACTCCAACATCGAAATCTTGTTAAATTACGCGGCTATTGCATAAAGGGAGAAGAAAAAATTCTACTCTATGAATATATGCCTAATAAGAGTTTGGACTTATTGATCTTCGATCCTGCAAAAAGCATAATTTTGGATTGGCCAATGCGGTTTGATATAATTCTCGGAATTGCTCGTGGACTACTCTATCTTCATCAAGACTCTAGACTTAGAGTTATTCATCGAGATTTAAAAACTAGCAACATTCTTCTAGACAAGGAGATGCAACCAAAAATATCCGATTTTGGATTGGCAAGAATATTTGGAGGCAAGGAAACAGAAGCAAATACTGAGAGAGTTGTCGGGACATATGGATACATGTCTCCCGAATATGCATTAGAAGGACAATTCTCTACAAAATCAGATGTTTTCAGCTTTGGTGTTGTCTTGCTTGAGATCATTAGTGGAAAAAAGAACATGGGATTTCATCGGACTAGAGAAATTTCAAGCCTTTTGGGTTATGCCTGGACACTATGGAGAGAAGAAAAACTCCAAGATTTAATGGATTCATCTCTATGTGATACTTATGATGCTTACCAAATCATTAGGTGTTCACAAATAGGACTTTTATGCGTACAAGATGAGCCAGATGATCGTCCACACATGTCAAATGTTGTGACCATGCTAGACAATGAAACTACATTCCTATCAGTTCCTAAACAACCAACCTTTTTTACACGTAAAAACCTATCTAACACAGCTTCTTCAAGTGTGCAACTTGAAAGTAGTATTCAAGAAGGCCGATAG	3096	0.396	MTTVFRFFNMYAFWFLICSSPTCFAGDTLKAGQKIIGDDTNLVSAGKIFELGFFTPSITGGSQNYLGIWYRMQEGLEQPQKQIVVWVANRDNPVAVGSTGVFKIAGDGNLVVEDTSGNNKTYWSSNSSSKSKVKVFSNSSPKNMILKLMDSGNLVLYDDEDKEVKLWESFENPSDTFLPGMKMDRNLKLTSWKGDDDPGSGNFSFKMEGIGGIRFIILNRDQIYWESEFYETRNYKVNNDKLDDISSEVYSLLTNFSLLRWQYGNTRLFLDSTGMIQLADVNLLEVEPSGRWKQPKTNCLRYNYCGNFASCNDNDGDSPCKCLPGFDNDNLGDGDYPLLDEASCTRRKSAPCTGNDTAFLNLTMIKTGRPDIKKMVEYEENCTSMCVGMCPQCQAYSYAPLPTEHQRTANNPSNCWIWTHNLTTLKENYTNWEDDRRLYVLVDKSDIAPTPRTCEPCGTNIVPYPLSTGSKCGDPRYFNFRCNTSMGQLSFSNNTNNTNNTNSNINYRVIRVNPSSRTFTIYQEVKDSLINRYCEGSKSVGNLKVSSPFGLSSDQLCSKQVEVSWEAPSKEPICDNSADCLGWKHSTCSEGKCLCNANYHWSGEFLTCTNTDSSEHGSFPNATKHSTKASSSFSLILGLTLPSVVILACIVILVYVCRRRIALMVKQDKESIQRNIRGHFTDSERHVKDLIDMEGLEENDNEGIEVPYFDFETIVTATNNFSDANKLGKGGYGPVYKGTLQGGQEIAVKRLSSVSSQGLQEFKNEVILIAKLQHRNLVKLRGYCIKGEEKILLYEYMPNKSLDLLIFDPAKSIILDWPMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDKEMQPKISDFGLARIFGGKETEANTERVVGTYGYMSPEYALEGQFSTKSDVFSFGVVLLEIISGKKNMGFHRTREISSLLGYAWTLWREEKLQDLMDSSLCDTYDAYQIIRCSQIGLLCVQDEPDDRPHMSNVVTMLDNETTFLSVPKQPTFFTRKNLSNTASSSVQLESSIQEGR	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi5g01794	1031	ProSiteProfiles	Protein kinase domain profile.	721	999	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g01794	1031	Pfam	S-locus glycoprotein domain	262	328	IPR000858	GO:0048544
	Vivi5g01794	1031	CDD	STKc_IRAK	727	994	-	-
	Vivi5g01794	1031	SMART	serkin_6	721	999	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi5g01794	1031	Gene3D	Phosphorylase Kinase; domain 1	686	796	-	-
	Vivi5g01794	1031	Gene3D	-	22	172	IPR036426	-
	Vivi5g01794	1031	SMART	blect_4	33	173	IPR001480	-
	Vivi5g01794	1031	SUPERFAMILY	alpha-D-mannose-specific plant lectins	84	198	IPR036426	-
	Vivi5g01794	1031	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	686	796	-	-
	Vivi5g01794	1031	SUPERFAMILY	Protein kinase-like (PK-like)	703	1013	IPR011009	-
	Vivi5g01794	1031	CDD	B_lectin	35	173	IPR001480	-
	Vivi5g01794	1031	FunFam	Receptor-like serine/threonine-protein kinase SD1-8	21	170	-	-
	Vivi5g01794	1031	Gene3D	Transferase(Phosphotransferase) domain 1	797	1003	-	-
	Vivi5g01794	1031	ProSiteProfiles	Bulb-type lectin domain profile.	26	169	IPR001480	-
	Vivi5g01794	1031	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	134	1015	-	-
	Vivi5g01794	1031	Pfam	D-mannose binding lectin	84	188	IPR001480	-
	Vivi5g01794	1031	Pfam	Protein tyrosine and serine/threonine kinase	725	992	IPR001245	GO:0004672\|GO:0006468
	Vivi5g01794	1031	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	797	1000	-	-
	Vivi5g01794	1031	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	842	854	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi5g01794	Vivi-Chr5	65593068	65600866	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi5g01794	709	1010	Receptor kinase-like Gene Family	AT4G23140	58.442	3.40e-122	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vivi5g01794		PK_Tyr_Ser-Thr	3.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi5g01794	-		-	tpra:123882048	1509.2