Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01778 ATGGCGAGAACACCTTATTGTGACAAAAGTGGAATGAGGAAAGGGACTTGGACTGCTGAGGAAGATAGGAAATTAATTGCGTATGTAACTAGATATGGTTGCTGGAATTGGCGCCAACTCCCTAAGTTTGCAGGTCTTTCGAGGTGTGGGAAGAGTTGTCGATTGAGGTGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTTCACTCAACAAGAAGAGGAATTGATTATCCGAATGCATAAAAATCTGGGCAATAGATGGTCTGTCATTGCGGCTGAGTTACCTGGAAGAACTGATAACGAAATAAAGAACCATTGGCATACTTCTCTTAAGAAGAGAGTTCAACAGATGAACACAGTCTCAAATGAAGAAACCATAGCCACCAAATCTCAAGCTAGTTCCCATATCTCAGACATCACTGGCCCATTATCTCCATTTTCATCATCCAGTGAATTCTCTTCCACAACATCAGATCAGAGTTTCACTGCATTGGAAGATTTTGGTTTTCTGGATTCGTTTATAGAATCTATGGATGCAAGTTTTTGGCTTGATAATGACTTTACAAGCTCTCTAGATGCGTACACAGAGTCAACAGTTGATAGTGTTTGGACGCACCCATATGAAGGTGATATGTCCCACATTCAATAG 654 0.4067 MARTPYCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYLRPNIKRGNFTQQEEELIIRMHKNLGNRWSVIAAELPGRTDNEIKNHWHTSLKKRVQQMNTVSNEETIATKSQASSHISDITGPLSPFSSSSEFSSTTSDQSFTALEDFGFLDSFIESMDASFWLDNDFTSSLDAYTESTVDSVWTHPYEGDMSHIQ 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01778 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g01778 217 CDD SANT 69 112 IPR001005 -
Vivi5g01778 217 Gene3D - 14 66 - -
Vivi5g01778 217 FunFam MYB-related transcription factor 13 66 - -
Vivi5g01778 217 CDD SANT 16 61 IPR001005 -
Vivi5g01778 217 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vivi5g01778 217 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g01778 217 SMART sant 66 114 IPR001005 -
Vivi5g01778 217 SMART sant 13 63 IPR001005 -
Vivi5g01778 217 Gene3D - 68 139 - -
Vivi5g01778 217 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 168 - -
Vivi5g01778 217 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g01778 217 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vivi5g01778 217 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g01778 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01778 Vivi-Chr5 64416997 64418018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01778 1 186 MYB Transcription Factor Family AT2G31180 52.604 1.33e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g01778 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01778 K09422 - gmx:100777107 278.87