Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01772 ATGGTAAGAGCTCCTTATTTTGATGAAAATGGAACAAAGAAAGGTGCATGGAGCGAAGAAGAGGATCAAATGCTTATTGCTCACGTTCAGAGACATGGTCATGCTAATTGGCGTCAACTTCCCAAAGTTGCAGGTTTAGCCAGATGTGGAAAGAGTTGTCGGTTGCGTTGGCTGAATTACCTGCGCCCAAATCTAAAACGAGGGAGCTATACACAGAACGAGGAACAAATGATCATGGAGTTGCATAAAAAGCATGGGAATAGATGGTCTCTTATAGCTGAAAGTTTACCAGAAAGATCAGACAACGAGATCAAGAATTTCTGGCACAGCCACCTAAAGAAATTCACAAGGAGCAATGAGAGCAAGATTACTCAAGAGATTGAAAAGACAAAAAGTTTGGAAAGTTCATATTCAATGTCTTACACTGCTACTAAAGCCAGTTCCCCTTCAATTTCATCTAGTCATGTGGAATCAAACATGGACTTGTATAGAATAGAAAATGATGTTGCTTCTTGGGAAACATGGAATGGATTCACCAACAATTTTTGGACTGAACCTTTTGTTTATGATAACACATTCAGTCAGGATTACTTTCCCATTTCATATTGTGGAGTAGAGCTAGAGGATCCATATTTTATATAG 642 0.3894 MVRAPYFDENGTKKGAWSEEEDQMLIAHVQRHGHANWRQLPKVAGLARCGKSCRLRWLNYLRPNLKRGSYTQNEEQMIMELHKKHGNRWSLIAESLPERSDNEIKNFWHSHLKKFTRSNESKITQEIEKTKSLESSYSMSYTATKASSPSISSSHVESNMDLYRIENDVASWETWNGFTNNFWTEPFVYDNTFSQDYFPISYCGVELEDPYFI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01772 213 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi5g01772 213 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vivi5g01772 213 CDD SANT 69 112 IPR001005 -
Vivi5g01772 213 Gene3D - 69 114 - -
Vivi5g01772 213 CDD SANT 16 61 IPR001005 -
Vivi5g01772 213 FunFam MYB-related transcription factor 13 66 - -
Vivi5g01772 213 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi5g01772 213 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi5g01772 213 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 153 - -
Vivi5g01772 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi5g01772 213 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi5g01772 213 SMART sant 66 114 IPR001005 -
Vivi5g01772 213 SMART sant 13 63 IPR001005 -
Vivi5g01772 213 Gene3D - 7 66 - -
Vivi5g01772 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01772 Vivi-Chr5 64019986 64021486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01772 1 192 MYB Transcription Factor Family AT2G31180 43.719 5.92e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi5g01772 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01772 K09422 - gmx:100781032 276.174