Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01754 ATGACGATTGGTTCTTTCTTCATCAGAGCTTCCAGAGCTCTCACCACTCACCCTTTCTCCTCCAACTTCCTGCTTCTCTGTACTATCAGCGGTGGAGGTGTGGTGGCACTCTCAGAATCAGAATCACAATCAGAAGCTGAACGTCCTATTGTTGAAGATCATGAGCCGCGCAAAAAGAAAGTAGTTGTCCTTGGAACTGGATGGGCTGCTACCAGTTTCCTCAAGGGTTTGGATGCATCATTATATGATGTTCAGGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTGCCAAGTGTCACTTGTGGGACAGTTGAAGCTCGGAGCATCGTTGAACCCGTCCGAAACATCATTAAAAAGAGTAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTGTCAAGATTGATGCTGCAGGAAAAAAGGTTTTTTGCCGGTCTAATATTGAAAAGCTAGTGGGAAGTGGTGAATTTTCTCTGGACTACGACTTCTTGGTTGTATCGGTAGGAGCACAAGTAAATACTTTTAATACCCCGGGTGTCAAGGAGAATTGTCATTTTCTGAAGGATGTCGAGGATGCTCAGAAGATCAGACTGTCTGTAATAGATTGTCTTGAGAAGGCTGTTCTTCCAAGTCAATCTGAAGAGGAGCAAAGGTCAAATCTTCATTTTGTAATCGTTGGAGGAGGTCCTACTGGTGTTGAATTTGCTGCAGAGCTTCATGATTTTATCCAAGAAGATTTGATCAAATTATATCCAACCGTTAAAGATAAAGTGAAGATAACGTTAATTCAATCTGGGGATCACATTTTGAACATGTTTGATGAAAGAATAAGTTTATTTGCTGAGCAAAAGTTTACAAGAGATGGTATAGAAGTTCAAACTGGATGCCGTGTTTTGAGTGTTAATGAGAAAGAAATTACAATGAAGGTGAAATCAACAGGAGTGGTTTCCTCTGTGCCTCATGGATTGGTTATCTGGTCCACTGGCATTTCTACTCTTCCTGTTATAAAGGACTTTATGGAAGAAATTGGTCAGACTAAAAGGCACGTACTAGCAACTGACGAATGGTTGAGAGTAAACGGATGTGAAGATGTGTTTGCCATTGGTGATTGCTCATCAATAAAGCAACGTAAAATCATGGATGACATCTTGGACATATTTAAGGCCGCAGACAAAGATAACTCCGGTACCTTAACCGTAGAAGAATTCAAAGAAGTGATGGATGACATAATCTTAAGATATCCTCAAGTTGAATACTATCTACAGAAGAAACATATACTTGATCTGAGGGTTCTGTGGAACGATGCAGAAGGAAATGAAAGAAAAGAAATAGACATAGAAGGGTTGAAGCTTGCCCTTTCTGTTGCAGATTCACAAGTGAAGACTCTTCCAGCAACTGCACAGGTTGCTGCGCAACAAGGTGCATATCTAGCTAGTTGTTTTAACCGCAATGATGAATGTAAAGATCATCCCGAAGGACCTCGACGATTTACAGAATCTGGACATCATCGGTTTCTCCCCTTCCGGTATAAGCATTTTGGGCAATTTGCTCCATTGGGCGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCCATCGGTCACAGCACTCAGTGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACACGGTATTTGGTCGTGTCCGATTGGACTAGAAGATTCGTCTTTGGGAGGGATTCAAGTCGAGTTTAA 1740 0.4207 MTIGSFFIRASRALTTHPFSSNFLLLCTISGGGVVALSESESQSEAERPIVEDHEPRKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKSKGEIKFWEAECVKIDAAGKKVFCRSNIEKLVGSGEFSLDYDFLVVSVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCLEKAVLPSQSEEEQRSNLHFVIVGGGPTGVEFAAELHDFIQEDLIKLYPTVKDKVKITLIQSGDHILNMFDERISLFAEQKFTRDGIEVQTGCRVLSVNEKEITMKVKSTGVVSSVPHGLVIWSTGISTLPVIKDFMEEIGQTKRHVLATDEWLRVNGCEDVFAIGDCSSIKQRKIMDDILDIFKAADKDNSGTLTVEEFKEVMDDIILRYPQVEYYLQKKHILDLRVLWNDAEGNERKEIDIEGLKLALSVADSQVKTLPATAQVAAQQGAYLASCFNRNDECKDHPEGPRRFTESGHHRFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRYLVVSDWTRRFVFGRDSSRV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01754 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 409 - -
Vivi5g01754 579 Pfam EF hand 385 410 IPR002048 GO:0005509
Vivi5g01754 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 426 578 - -
Vivi5g01754 579 SUPERFAMILY EF-hand 338 461 IPR011992 -
Vivi5g01754 579 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 381 IPR023753 GO:0016491
Vivi5g01754 579 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Vivi5g01754 579 Gene3D - 441 579 - -
Vivi5g01754 579 Gene3D - 49 394 - -
Vivi5g01754 579 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Vivi5g01754 579 SUPERFAMILY FAD/NAD(P)-binding domain 58 276 IPR036188 -
Vivi5g01754 579 PANTHER NADH DEHYDROGENASE 54 579 IPR045024 GO:0003954|GO:0006116
Vivi5g01754 579 SUPERFAMILY FAD/NAD(P)-binding domain 223 377 IPR036188 -
Vivi5g01754 579 SMART efh_1 384 412 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01754 Vivi-Chr5 62769968 62773514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01754 5 579 Chloroplast and Mitochondria Gene Families AT4G21490 62.586 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01754 K03885 - gmx:100793566 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g01754 5 62769968 62773514 Vivi5g01754 5 62769968 62773514 ECH